preamble:
  summary: Custom pipeline using public and local resources
  input_reference_genome: hg38/genomes/GRCh38-hg38

annotators:
- effect_annotator:
    gene_models: hg38/gene_models/MANE/1.5
    attributes:
    - worst_effect
    - gene_list

- normalize_allele_annotator

- allele_score_annotator:
    resource_id: hg38/scores/ClinVar_20251019
    input_annotatable: normalized_allele
    attributes:
    - CLNSIG
    - CLNDN

- position_score_annotator: ATAC-seq/ENCSR814RGG

- gene_score_annotator:
    resource_id: my_score
    input_gene_list: gene_list
    attributes:
    - name: pHaplo
      source: pHaplo