gpf_web package

Routes

• Common reports api
• Datasets api
• Enrichment api
• Family api
• Gene scores
• Gene sets
• Gene view
• Genomes api
• Genomic scores api
• Genotype browser
• Gpf instance
• Measures api
• Person sets api
• Pheno browser api
• Pheno tool api
• Query state save
• Sentry
• User queries

Subpackages

• common_reports_api package
  • Subpackages
    • common_reports_api.tests package
  • Submodules
  • common_reports_api.common_reports_helper module
    • BaseCommonReportsHelper
    • CommonReportsHelper
  • common_reports_api.urls module
  • common_reports_api.views module
  • Module contents
• common_reports_api.tests package
  • Submodules
  • common_reports_api.tests.test_common_reports_api module
    • test_autogenerate_common_report()
    • test_families_data_all_download()
    • test_families_data_all_download_no_permissions()
    • test_families_data_download()
    • test_families_data_download_no_permissions()
    • test_families_tags_download()
    • test_families_tags_download_errors_on_bad_body()
    • test_family_counters()
    • test_family_counters_download()
    • test_variant_reports()
    • test_variant_reports_full()
    • test_variant_reports_has_permissions()
    • test_variant_reports_permissions()
  • Module contents
• conftest module
• datasets_api package
  • Subpackages
    • datasets_api.migrations package
    • datasets_api.tests package
  • Submodules
  • datasets_api.models module
  • datasets_api.permissions module
  • datasets_api.urls module
  • datasets_api.views module
  • Module contents
• datasets_api.migrations package
  • Submodules
  • datasets_api.migrations.0001_initial module
    • Migration
  • datasets_api.migrations.0002_dataset_groups module
    • Migration
  • datasets_api.migrations.0003_alter_dataset_options module
    • Migration
  • datasets_api.migrations.0004_dataset_broken module
    • Migration
  • datasets_api.migrations.0005_dataset_dataset_name module
    • Migration
  • datasets_api.migrations.0006_datasethierarchy module
    • Migration
  • datasets_api.migrations.0007_datasethierarchy_direct module
    • Migration
  • datasets_api.migrations.0008_datasethierarchy_instance_id module
    • Migration
  • Module contents
• datasets_api.tests package
  • Submodules
  • datasets_api.tests.conftest module
    • custom_wgpf()
    • custom_wgpf_module()
  • datasets_api.tests.test_datasets_api module
  • datasets_api.tests.test_permissions module
  • Module contents
• enrichment_api package
  • Subpackages
    • enrichment_api.tests package
  • Submodules
  • enrichment_api.enrichment_builder module
    • BaseEnrichmentBuilder
    • EnrichmentBuilder
  • enrichment_api.enrichment_helper module
    • BaseEnrichmentHelper
    • EnrichmentHelper
  • enrichment_api.enrichment_serializer module
    • EnrichmentSerializer
  • enrichment_api.urls module
  • enrichment_api.views module
  • Module contents
• enrichment_api.tests package
  • Submodules
  • enrichment_api.tests.conftest module
    • coding_len_background()
    • create_test_study()
    • enrichment_builder()
    • enrichment_helper()
    • enrichment_serializer()
    • f1_trio()
    • f1_trio_variants()
    • grr()
    • psc_config()
    • samocha_background()
    • study_data()
    • t4c8_fixture()
  • enrichment_api.tests.test_enrichment_api module
    • test_enrichment_api_permissions()
    • test_enrichment_models()
    • test_enrichment_models_missing_study()
    • test_enrichment_test_missing_dataset_id()
    • test_enrichment_test_missing_gene_symbols()
    • test_enrichment_test_missing_study()
    • test_enrichment_test_with_gene_score()
    • test_enrichment_test_with_gene_score_with_zero_range()
    • test_enrichment_test_with_gene_set()
    • test_enrichment_test_with_gene_symbols()
  • enrichment_api.tests.test_enrichment_builder module
    • test_build()
    • test_build_people_group_selector()
    • test_build_results()
  • enrichment_api.tests.test_enrichment_helper_simple module
    • test_get_default_background_model()
    • test_get_default_background_model_default()
    • test_get_selected_counting_models()
    • test_get_selected_counting_models_default()
    • test_get_selected_counting_models_default_with_counting()
    • test_get_selected_person_set_collections()
    • test_get_selected_person_set_collections_default()
    • test_get_study_background()
    • test_get_study_enrichment_config()
    • test_gpf_fixture()
  • enrichment_api.tests.test_enrichment_serializer module
    • test_serialize()
    • test_serialize_enrichment_result()
  • enrichment_api.tests.test_t4c8_enrichment module
    • denovo_1()
    • ped_1()
    • study_1()
    • test_build_study_1_enrichment_cache()
    • test_study_1()
    • test_study_1_enrichment()
    • test_study_1_enrichment_with_caching()
    • test_t4c8_coding_len_background()
    • test_t4c8_setup()
  • Module contents
• family_api package
  • Subpackages
    • family_api.tests package
  • Submodules
  • family_api.urls module
  • family_api.views module
  • Module contents
• family_api.tests package
  • Submodules
  • family_api.tests.test_family_api module
    • test_family_api_permissions()
    • test_family_details_view()
    • test_family_details_view_nonexistent()
    • test_full_family_details_view()
    • test_full_study_families_view()
    • test_list_families_view()
    • test_list_families_view_nonexistent()
    • test_list_families_view_tag_filter()
    • test_list_families_view_tag_filter_multiple()
    • test_list_members_view()
    • test_list_members_view_nonexistent()
    • test_list_tags_view()
    • test_member_details_view()
    • test_member_details_view_nonexistent()
  • Module contents
• gene_profiles_api package
  • Subpackages
    • gene_profiles_api.tests package
  • Submodules
  • gene_profiles_api.table_views module
  • gene_profiles_api.urls module
  • gene_profiles_api.views module
  • Module contents
• gene_profiles_api.tests package
  • Submodules
  • gene_profiles_api.tests.test_agp_api module
    • test_configuration()
    • test_get_gene_symbols()
    • test_get_links()
    • test_get_statistic()
    • test_get_statistics()
  • gene_profiles_api.tests.test_agp_api_configless module
    • test_configuration()
  • Module contents
• gene_scores package
  • Subpackages
    • gene_scores.tests package
  • Submodules
  • gene_scores.urls module
  • gene_scores.views module
  • Module contents
• gene_scores.tests package
  • Submodules
  • gene_scores.tests.conftest module
    • gene_scores_db()
  • gene_scores.tests.test_gene_scores module
    • test_get_genes_by_score()
    • test_get_t4c8_score()
    • test_scores_created()
    • test_t4c8_score_available()
  • gene_scores.tests.test_gene_scores_db module
    • test_get_gene_gene_scores_db()
  • gene_scores.tests.test_gene_scores_views module
    • test_gene_score_download()
    • test_gene_scores_list_view()
    • test_gene_scores_partitions()
    • test_gene_scores_partitions_bad_request()
  • gene_scores.tests.test_scores_partitions module
    • test_bad_gene_score_partition()
    • test_gene_scores_partitions()
  • Module contents
• gene_sets package
  • Subpackages
    • gene_sets.tests package
  • Submodules
  • gene_sets.urls module
  • gene_sets.views module
  • Module contents
• gene_sets.tests package
  • Submodules
  • gene_sets.tests.test_gene_sets_api module
    • name_in_gene_sets()
    • test_bad_gene_set_collection_not_found()
    • test_denovo_gene_set_download()
    • test_denovo_gene_set_not_found()
    • test_denovo_gene_sets()
    • test_denovo_gene_sets_types()
    • test_gene_set_download_missense()
    • test_gene_sets_collections()
    • test_gene_sets_empty_query()
    • test_gene_sets_missing_collection()
    • test_get_bad_gene_set_collection_not_found()
    • test_get_denovo_gene_set_not_found()
    • test_get_gene_set_collection_empty_query()
    • test_get_gene_set_download_synonymous_autism()
    • test_get_gene_set_download_synonymous_recurrent()
    • test_get_gene_set_download_synonymous_triple()
    • test_get_main_gene_set_not_found()
    • test_main_gene_set_not_found()
  • Module contents
• gene_view package
  • Subpackages
    • gene_view.tests package
  • Submodules
  • gene_view.urls module
  • gene_view.views module
  • Module contents
• gene_view.tests package
  • Submodules
  • gene_view.tests.test_gene_view module
    • test_gene_view_api_permissions()
    • test_gene_view_config()
    • test_gene_view_summary_variants_download()
    • test_gene_view_summary_variants_download_group()
    • test_gene_view_summary_variants_query()
    • test_gene_view_summary_variants_query_group()
    • test_query_gene_view_summary_variants_dataset()
    • test_query_gene_view_summary_variants_download_dataset()
    • test_query_gene_view_summary_variants_download_study()
    • test_query_gene_view_summary_variants_study()
  • Module contents
• genomes_api package
  • Subpackages
    • genomes_api.tests package
  • Submodules
  • genomes_api.urls module
  • genomes_api.views module
  • Module contents
• genomes_api.tests package
  • Submodules
  • genomes_api.tests.test_gene_models_api module
    • test_default_gene_models_id()
    • test_get_case_insensitive_gene()
    • test_get_chd8_transcripts()
    • test_get_nonexistant_gene_transcripts()
    • test_search_gene_symbols()
    • test_validate_gene_symbols()
  • Module contents
• genomic_scores_api package
  • Subpackages
    • genomic_scores_api.tests package
  • Submodules
  • genomic_scores_api.urls module
  • genomic_scores_api.views module
  • Module contents
• genomic_scores_api.tests package
  • Submodules
  • genomic_scores_api.tests.test_genomic_scores_api module
    • test_get_genomic_scores()
  • Module contents
• genotype_browser package
  • Subpackages
    • genotype_browser.tests package
  • Submodules
  • genotype_browser.urls module
  • genotype_browser.views module
  • Module contents
• genotype_browser.tests package
  • Submodules
  • genotype_browser.tests.conftest module
    • download_sources()
    • preview_sources()
    • summary_download_sources()
    • summary_preview_sources()
  • genotype_browser.tests.test_effect_types_download module
    • test_effect_details_download()
  • genotype_browser.tests.test_pheno_columns module
    • test_query_preview_have_pheno_column_values()
  • genotype_browser.tests.test_pheno_filters module
    • test_query_with_pheno_filters()
  • genotype_browser.tests.test_query_api module
  • Module contents
• gpf_instance package
  • Subpackages
    • gpf_instance.tests package
  • Submodules
  • gpf_instance.apps module
    • WDAEConfig
  • gpf_instance.extension module
    • GPFExtensionBase
    • GPFTool
  • gpf_instance.gpf_instance module
    • get_wgpf_instance()
  • gpf_instance.urls module
  • gpf_instance.views module
  • Module contents
• gpf_instance.tests package
  • Submodules
  • gpf_instance.tests.test_genome_view module
    • test_genome_hg19()
    • test_genome_hg38()
    • test_genome_other()
  • gpf_instance.tests.test_version_api module
    • mock_instance()
    • test_get_gpf_version()
    • test_gpf_about_description()
    • test_gpf_main_description()
    • test_update_gpf_about_description_anonymous()
    • test_update_gpf_main_description_anonymous()
  • gpf_instance.tests.test_wgpf_instance module
  • Module contents
• gpf_web package
  • Submodules
  • gpf_web.default_settings module
    • CustomFormatter
  • gpf_web.eager_settings module
  • gpf_web.gunicorn_settings module
  • gpf_web.mypy_settings module
  • gpf_web.remote_settings module
  • gpf_web.settings module
  • gpf_web.silk_settings module
  • gpf_web.test_settings module
  • gpf_web.urls module
  • gpf_web.wdaemanage module
    • main()
  • gpf_web.wgpf module
    • cli()
  • gpf_web.wgpf_settings module
  • gpf_web.wsgi module
  • Module contents
• gpfjs package
  • Submodules
  • gpfjs.views module
    • favicon()
    • index()
  • Module contents
• groups_api package
  • Subpackages
    • groups_api.migrations package
    • groups_api.tests package
  • Submodules
  • groups_api.serializers module
  • groups_api.urls module
  • groups_api.views module
  • Module contents
• groups_api.migrations package
  • Module contents
• groups_api.tests package
  • Submodules
  • groups_api.tests.conftest module
  • groups_api.tests.test_groups_rest module
  • Module contents
• measures_api package
  • Subpackages
    • measures_api.tests package
  • Submodules
  • measures_api.urls module
  • measures_api.views module
  • Module contents
• measures_api.tests package
  • Submodules
  • measures_api.tests.test_measures_api module
    • test_histograms_beta()
    • test_measures_api_permissions()
    • test_measures_list_categorical()
    • test_measures_list_continuous()
    • test_measures_list_wrong_request()
    • test_regressions()
    • test_role_list()
  • Module contents
• gpf_web
  • common_reports_api package
    • Subpackages
    • Submodules
    • common_reports_api.common_reports_helper module
    • common_reports_api.urls module
    • common_reports_api.views module
    • Module contents
  • conftest module
  • datasets_api package
    • Subpackages
    • Submodules
    • datasets_api.models module
    • datasets_api.permissions module
    • datasets_api.urls module
    • datasets_api.views module
    • Module contents
  • enrichment_api package
    • Subpackages
    • Submodules
    • enrichment_api.enrichment_builder module
    • enrichment_api.enrichment_helper module
    • enrichment_api.enrichment_serializer module
    • enrichment_api.urls module
    • enrichment_api.views module
    • Module contents
  • family_api package
    • Subpackages
    • Submodules
    • family_api.urls module
    • family_api.views module
    • Module contents
  • gene_profiles_api package
    • Subpackages
    • Submodules
    • gene_profiles_api.table_views module
    • gene_profiles_api.urls module
    • gene_profiles_api.views module
    • Module contents
  • gene_scores package
    • Subpackages
    • Submodules
    • gene_scores.urls module
    • gene_scores.views module
    • Module contents
  • gene_sets package
    • Subpackages
    • Submodules
    • gene_sets.urls module
    • gene_sets.views module
    • Module contents
  • gene_view package
    • Subpackages
    • Submodules
    • gene_view.urls module
    • gene_view.views module
    • Module contents
  • genomes_api package
    • Subpackages
    • Submodules
    • genomes_api.urls module
    • genomes_api.views module
    • Module contents
  • genomic_scores_api package
    • Subpackages
    • Submodules
    • genomic_scores_api.urls module
    • genomic_scores_api.views module
    • Module contents
  • genotype_browser package
    • Subpackages
    • Submodules
    • genotype_browser.urls module
    • genotype_browser.views module
    • Module contents
  • gpf_instance package
    • Subpackages
    • Submodules
    • gpf_instance.apps module
    • gpf_instance.extension module
    • gpf_instance.gpf_instance module
    • gpf_instance.urls module
    • gpf_instance.views module
    • Module contents
  • gpf_web package
    • Submodules
    • gpf_web.default_settings module
    • gpf_web.eager_settings module
    • gpf_web.gunicorn_settings module
    • gpf_web.mypy_settings module
    • gpf_web.remote_settings module
    • gpf_web.settings module
    • gpf_web.silk_settings module
    • gpf_web.test_settings module
    • gpf_web.urls module
    • gpf_web.wdaemanage module
    • gpf_web.wgpf module
    • gpf_web.wgpf_settings module
    • gpf_web.wsgi module
    • Module contents
  • gpfjs package
    • Submodules
    • gpfjs.views module
    • Module contents
  • groups_api package
    • Subpackages
    • Submodules
    • groups_api.serializers module
    • groups_api.urls module
    • groups_api.views module
    • Module contents
  • measures_api package
    • Subpackages
    • Submodules
    • measures_api.urls module
    • measures_api.views module
    • Module contents
  • person_sets_api package
    • Subpackages
    • Submodules
    • person_sets_api.urls module
    • person_sets_api.views module
    • Module contents
  • pheno_browser_api package
    • Subpackages
    • Submodules
    • pheno_browser_api.pheno_browser_helper module
    • pheno_browser_api.urls module
    • pheno_browser_api.views module
    • Module contents
  • pheno_tool_api package
    • Subpackages
    • Submodules
    • pheno_tool_api.adapter module
    • pheno_tool_api.urls module
    • pheno_tool_api.views module
    • Module contents
  • query_base package
    • Submodules
    • query_base.query_base module
    • Module contents
  • query_state_save package
    • Subpackages
    • Submodules
    • query_state_save.models module
    • query_state_save.serializers module
    • query_state_save.urls module
    • query_state_save.views module
    • Module contents
  • sentry package
    • Subpackages
    • Submodules
    • sentry.urls module
    • sentry.views module
    • Module contents
  • studies package
    • Subpackages
    • Submodules
    • studies.conftest module
    • studies.query_transformer module
    • studies.response_transformer module
    • studies.study_wrapper module
    • Module contents
  • user_queries package
    • Subpackages
    • Submodules
    • user_queries.models module
    • user_queries.urls module
    • user_queries.views module
    • Module contents
  • users_api package
    • Subpackages
    • Submodules
    • users_api.forms module
    • users_api.models module
    • users_api.serializers module
    • users_api.urls module
    • users_api.validators module
    • users_api.views module
    • Module contents
  • utils package
    • Submodules
    • utils.authentication module
    • utils.datasets module
    • utils.email_regex module
    • utils.expand_gene_set module
    • utils.gene_sets module
    • utils.logger module
    • utils.pagination module
    • utils.password_requirements module
    • utils.query_params module
    • utils.streaming_response_util module
    • utils.testing module
    • Module contents
• person_sets_api package
  • Subpackages
    • person_sets_api.tests package
  • Submodules
  • person_sets_api.urls module
  • person_sets_api.views module
  • Module contents
• person_sets_api.tests package
  • Submodules
  • person_sets_api.tests.test_person_sets_api module
    • test_collection_configs_view()
    • test_collection_domain_view()
    • test_get_person_sets_collection_stats()
    • test_get_person_sets_collection_stats_no_id()
    • test_get_person_sets_collection_stats_nonexistent()
  • Module contents
• pheno_browser_api package
  • Subpackages
    • pheno_browser_api.tests package
  • Submodules
  • pheno_browser_api.pheno_browser_helper module
    • BasePhenoBrowserHelper
    • CountError
    • PhenoBrowserHelper
  • pheno_browser_api.urls module
  • pheno_browser_api.views module
  • Module contents
• pheno_browser_api.tests package
  • Submodules
  • pheno_browser_api.tests.test_pheno_browser_api module
  • Module contents
• pheno_tool_api package
  • Subpackages
    • pheno_tool_api.tests package
  • Submodules
  • pheno_tool_api.adapter module
    • PhenoToolAdapter
    • PhenoToolAdapterBase
  • pheno_tool_api.urls module
  • pheno_tool_api.views module
  • Module contents
• pheno_tool_api.tests package
  • Submodules
  • pheno_tool_api.tests.test_pheno_tool_api module
    • test_pheno_tool_api_permissions()
    • test_pheno_tool_download_valid_request()
    • test_pheno_tool_view_cnv_on_non_cnv_study()
    • test_pheno_tool_view_family_ids_filter()
    • test_pheno_tool_view_missense()
    • test_pheno_tool_view_missing_dataset()
    • test_pheno_tool_view_missing_measure()
    • test_pheno_tool_view_na_values()
    • test_pheno_tool_view_normalize()
    • test_pheno_tool_view_pheno_filter()
    • test_pheno_tool_view_query_no_limit()
    • test_pheno_tool_view_valid_request()
  • pheno_tool_api.tests.test_pheno_tool_view_class_static_methods module
  • Module contents
• query_base package
  • Submodules
  • query_base.query_base module
  • Module contents
• query_state_save package
  • Subpackages
    • query_state_save.migrations package
    • query_state_save.tests package
  • Submodules
  • query_state_save.models module
  • query_state_save.serializers module
  • query_state_save.urls module
  • query_state_save.views module
  • Module contents
• query_state_save.migrations package
  • Submodules
  • query_state_save.migrations.0001_initial module
    • Migration
  • query_state_save.migrations.0002_auto_20190205_0736 module
    • Migration
  • query_state_save.migrations.0003_querystate_origin_querystate_timestamp module
    • Migration
  • Module contents
• query_state_save.tests package
  • Submodules
  • query_state_save.tests.conftest module
    • load_object()
    • query_load()
    • query_save()
    • save_object()
    • simple_query_data()
  • query_state_save.tests.test_save_query_data module
  • Module contents
• sentry package
  • Subpackages
    • sentry.tests package
  • Submodules
  • sentry.urls module
  • sentry.views module
    • PlainTextParser
    • sentry()
  • Module contents
• sentry.tests package
  • Submodules
  • sentry.tests.test_sentry module
    • test_sentry_invalid_cookie()
    • test_sentry_missing_cookie()
    • test_sentry_missing_env()
    • test_sentry_valid_cookie()
  • Module contents
• studies package
  • Subpackages
    • studies.tests package
  • Submodules
  • studies.conftest module
    • custom_query_transformer()
    • custom_response_transformer()
    • custom_wgpf()
    • custom_wgpf_module()
  • studies.query_transformer module
    • QueryTransformer
    • get_or_create_query_transformer()
    • make_query_transformer()
  • studies.response_transformer module
    • ResponseTransformer
    • get_or_create_response_transformer()
    • make_response_transformer()
    • members_in_order_get_family_structure()
  • studies.study_wrapper module
    • QueryTransformerProtocol
    • ResponseTransformerProtocol
    • WDAEAbstractStudy
    • WDAEStudy
    • WDAEStudyGroup
    • get_clean_config()
    • remove_none_values()
  • Module contents
• studies.tests package
  • Submodules
  • studies.tests.test_pheno_measures_columns module
    • test_pheno_measure_genotype_browser_columns()
    • test_study_with_phenotype_data()
  • studies.tests.test_query_transformer module
    • test_affected_status()
  • studies.tests.test_query_transformer_family_tags module
    • test_transform_and_mode_family_tags_kwargs()
    • test_transform_complex_family_tags_kwargs()
    • test_transform_deselected_family_tags_kwargs()
    • test_transform_or_mode_family_tags_kwargs()
    • test_transform_selected_family_tags_kwargs()
  • studies.tests.test_query_transformer_present_in_child_and_parent module
    • test_attributes_query_roles()
    • test_transform_parent_zygosity_with_neither()
    • test_transform_present_in_child_and_present_in_parent()
    • test_transform_present_in_child_and_present_in_parent_inheritance()
    • test_transform_present_in_child_and_present_in_parent_roles()
  • studies.tests.test_response_transformer_columns module
    • fv1()
    • fv2()
    • phenotype_person_sets()
    • test_inheritance_type_column()
    • test_is_denovo()
    • test_phenotype_attr_columns()
    • test_special_attr_columns()
    • test_special_attrs_formatting()
  • studies.tests.test_study_config_genotype_browser_columns module
    • gpf_fixture()
    • test_genotype_browser_download_columns_default()
    • test_genotype_browser_download_columns_ext()
    • test_genotype_browser_preview_columns_default()
    • test_genotype_browser_preview_columns_ext()
    • test_study_wrapper_download_columns_ext()
    • test_study_wrapper_preview_columns_ext()
    • trio_study()
  • studies.tests.test_study_group_person_sets_queries module
    • dataset()
    • gpf_fixture()
    • query_transformer()
    • response_transformer()
    • study_1()
    • study_2()
    • test_dataset_person_sets_queries()
    • test_dataset_simple()
    • wgpf_fixture()
  • studies.tests.test_study_query_request module
    • test_query_request_simple()
  • studies.tests.test_study_wrapper module
    • test_genotype_data_config_immutability()
    • test_is_group_dataset()
    • test_is_group_study()
    • test_make_config()
    • test_t4c8_dataset()
    • test_t4c8_study_1()
    • test_t4c8_study_2()
  • studies.tests.test_study_wrapper_person_sets module
    • dataset()
    • instance_path()
    • query_transformer()
    • test_person_set_collection_queries()
    • wgpf_instance()
  • studies.tests.test_study_wrapper_queries module
    • test_nested_queries()
    • test_query_affected_status()
    • test_query_all_variants()
    • test_query_complex_query()
    • test_query_effect_types_variants()
    • test_query_family_filters()
    • test_query_family_variants()
    • test_query_gene_scores()
    • test_query_gene_scores_formatting()
    • test_query_inheritance_types()
    • test_query_limit_variants()
    • test_query_person_filters()
    • test_query_present_in_child()
    • test_query_present_in_parent()
    • test_query_present_in_parent_and_present_in_child()
    • test_query_present_in_parent_and_present_in_child_and_phenotypes()
    • test_query_regions_variants()
    • test_query_sexes_variants()
    • test_query_study_filters()
    • test_query_unique_family_variants()
    • test_query_variant_type_variants()
    • test_study_2_query_inheritance_variants()
    • test_zygosity_gender()
    • test_zygosity_roles_children()
    • test_zygosity_roles_parents()
    • test_zygosity_status()
  • studies.tests.test_study_wrapper_unique_variants_query module
    • dataset()
    • instance_path()
    • query_transformer()
    • test_summary_variant_ids()
    • test_unique_family_variants()
    • wgpf_instance()
  • Module contents
• user_queries package
  • Subpackages
    • user_queries.migrations package
  • Submodules
  • user_queries.models module
  • user_queries.urls module
  • user_queries.views module
  • Module contents
• user_queries.migrations package
  • Submodules
  • user_queries.migrations.0001_initial module
    • Migration
  • Module contents
• users_api package
  • Subpackages
    • users_api.management package
    • users_api.migrations package
    • users_api.tests package
  • Submodules
  • users_api.forms module
  • users_api.models module
  • users_api.serializers module
  • users_api.urls module
  • users_api.validators module
  • users_api.views module
  • Module contents
• users_api.management package
  • Subpackages
    • users_api.management.commands package
  • Module contents
• users_api.management.commands package
  • Submodules
  • users_api.management.commands.dataset_groups module
  • users_api.management.commands.dataset_mixin module
  • users_api.management.commands.datasets_export module
  • users_api.management.commands.datasets_restore module
  • users_api.management.commands.datasets_show module
  • users_api.management.commands.export_base module
  • users_api.management.commands.import_base module
  • users_api.management.commands.unlock_user module
  • users_api.management.commands.user_create module
  • users_api.management.commands.user_set_name module
    • Command
  • users_api.management.commands.user_setpasswd module
    • Command
  • users_api.management.commands.users_add module
  • users_api.management.commands.users_export module
  • users_api.management.commands.users_group_add module
  • users_api.management.commands.users_group_remove module
  • users_api.management.commands.users_remove module
    • Command
  • users_api.management.commands.users_restore module
  • users_api.management.commands.users_show module
  • Module contents
• users_api.migrations package
  • Submodules
  • users_api.migrations.0001_initial module
    • Migration
  • users_api.migrations.0002_auto_20190424_0751 module
    • Migration
  • users_api.migrations.0003_authenticationlog module
    • Migration
  • users_api.migrations.0004_resetpasswordcode_setpasswordcode_and_more module
    • Migration
  • users_api.migrations.0005_gpuserstate module
    • Migration
  • Module contents
• users_api.tests package
  • Submodules
  • users_api.tests.conftest module
  • users_api.tests.test_commands module
  • users_api.tests.test_commands_datasets module
  • users_api.tests.test_federation_credentials_api module
  • users_api.tests.test_users_api module
  • users_api.tests.test_users_authentication module
  • users_api.tests.test_users_groups module
  • users_api.tests.test_users_researcher_registration module
  • users_api.tests.test_users_rest module
  • users_api.tests.test_users_with_password module
  • users_api.tests.test_users_without_password module
  • Module contents
• utils package
  • Submodules
  • utils.authentication module
    • GPFOAuth2Authentication
    • ReadOnlyDBAuthentication
    • SessionAuthenticationWithUnauthenticatedCSRF
    • SessionAuthenticationWithoutCSRF
    • oauth_cookie_to_header()
  • utils.datasets module
    • find_dataset_id_in_dict()
    • find_dataset_id_in_request()
  • utils.email_regex module
    • is_email_valid()
  • utils.expand_gene_set module
    • expand_gene_set()
    • expand_gene_syms()
  • utils.gene_sets module
    • get_denovo_gene_set_spec()
  • utils.logger module
    • log_filter()
    • request_logging()
    • request_logging_function_view()
  • utils.pagination module
    • WdaePageNumberPagination
  • utils.password_requirements module
    • is_password_valid()
  • utils.query_params module
    • parse_query_params()
  • utils.streaming_response_util module
    • convert()
    • iterator_to_json()
  • utils.testing module
    • setup_t4c8_grr()
    • setup_t4c8_instance()
    • setup_wgpf_instance()
  • Module contents