dae.annotation package
======================

Submodules
----------

dae.annotation.annotatable module
---------------------------------

.. automodule:: dae.annotation.annotatable
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotate\_columns module
---------------------------------------

.. automodule:: dae.annotation.annotate_columns
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotate\_doc module
-----------------------------------

.. automodule:: dae.annotation.annotate_doc
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotate\_schema2\_parquet module
------------------------------------------------

.. automodule:: dae.annotation.annotate_schema2_parquet
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotate\_utils module
-------------------------------------

.. automodule:: dae.annotation.annotate_utils
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotate\_vcf module
-----------------------------------

.. automodule:: dae.annotation.annotate_vcf
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotation\_config module
----------------------------------------

.. automodule:: dae.annotation.annotation_config
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotation\_factory module
-----------------------------------------

.. automodule:: dae.annotation.annotation_factory
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotation\_pipeline module
------------------------------------------

.. automodule:: dae.annotation.annotation_pipeline
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.annotator\_base module
-------------------------------------

.. automodule:: dae.annotation.annotator_base
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.cnv\_collection\_annotator module
------------------------------------------------

.. automodule:: dae.annotation.cnv_collection_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.debug\_annotator module
--------------------------------------

.. automodule:: dae.annotation.debug_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.docker\_annotator module
---------------------------------------

.. automodule:: dae.annotation.docker_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.effect\_annotator module
---------------------------------------

.. automodule:: dae.annotation.effect_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.format\_handlers module
--------------------------------------

.. automodule:: dae.annotation.format_handlers
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.gene\_score\_annotator module
--------------------------------------------

.. automodule:: dae.annotation.gene_score_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.gene\_set\_annotator module
------------------------------------------

.. automodule:: dae.annotation.gene_set_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.genomic\_context module
--------------------------------------

.. automodule:: dae.annotation.genomic_context
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.liftover\_annotator module
-----------------------------------------

.. automodule:: dae.annotation.liftover_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.normalize\_allele\_annotator module
--------------------------------------------------

.. automodule:: dae.annotation.normalize_allele_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.parquet module
-----------------------------

.. automodule:: dae.annotation.parquet
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.reannotate\_instance module
------------------------------------------

.. automodule:: dae.annotation.reannotate_instance
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.record\_to\_annotatable module
---------------------------------------------

.. automodule:: dae.annotation.record_to_annotatable
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.score\_annotator module
--------------------------------------

.. automodule:: dae.annotation.score_annotator
   :members:
   :undoc-members:
   :show-inheritance:

dae.annotation.simple\_effect\_annotator module
-----------------------------------------------

.. automodule:: dae.annotation.simple_effect_annotator
   :members:
   :undoc-members:
   :show-inheritance:

Module contents
---------------

.. automodule:: dae.annotation
   :members:
   :undoc-members:
   :show-inheritance: