Genotype browser

POST ^/query/?

Query for variants from a dataset.

Example request:

POST /genotype_browser/preview/variants HTTP/1.1
Host: example.com
Content-Type: application/json
Accept: text/event-stream

{
  "datasetId": "iossifov_2014",
  "maxVariantsCount": 1000
}

Example response:

HTTP/1.1 200 OK
Vary: Accept
Content-Type: text/event-stream
[

[col1,col2,col3,col4.....]

,

[col1,col2,col3,col4.....]

,
......

,

[col1,col2,col3,col4.....]

]
Status Codes:
Request JSON Object:

  • datasetId (string) – ID of the dataset to query.

  • download (boolean) – Change response type for easier download.

  • genomicScores (json) – Genomic score range filter.

  • maxVariantsCount (integer) – Maximum amount of variants to query.

  • sources (list) – List of name-source objects: columns to fetch.

  • summaryVariantIds (list) – List of summary variant IDs for filter.

  • querySummary (boolean) – True if should query only summary variants.

  • uniqueFamilyVariants (boolean) – Query for unique variants only.

  • regions (list) – List of regions as strings to filter with.

  • presentInChild (json) – Roles object to filter with.

  • presentInParent (json) – Roles object to filter with.

  • inheritanceTypeFilter (list) – Inheritance filtering.

  • geneScores (list) – Gene score range filter.

  • genders (list) – Gender filter.

  • variantTypes (list) – Filter by variant type.

  • effectTypes (list) – Filter by effect type.

  • studyFilters (list) – Filter by study ID (dataset only).

  • personFilters (list) – Filter with person filters.

  • familyFilters (list) – Filter with family filters.

  • personIds (list) – Filter by person IDs.

  • familyTypes (list) – Filter by family type.

  • familyIds (list) – Filter by family IDs.

  • affectedStatus (list) – Filter by affected status.

  • tagIntersection (boolean) – Change Family tags interesection mode

  • selectedFamilyTags (list) – Family tags to include

  • deselectedFamilyTags (list) – Family tags to exlude