# pylint: disable=W0621,C0114,C0116,W0212,W0613
import pathlib
from gain.testing.acgt_import import acgt_grr
from gpf.genotype_storage.genotype_storage import GenotypeStorage
from gpf.gpf_instance import GPFInstance
from gpf.testing.setup_helpers import setup_gpf_instance
[docs]
def acgt_gpf(
root_path: pathlib.Path,
storage: GenotypeStorage | None = None) -> GPFInstance:
local_repo = acgt_grr(root_path)
gpf_instance = setup_gpf_instance(
root_path / "gpf_instance",
reference_genome_id="genome",
gene_models_id="empty_gene_models",
grr=local_repo)
if storage:
gpf_instance\
.genotype_storages\
.register_default_storage(storage)
return gpf_instance