All modules for which code is available
- _thread
- common_reports_api.common_reports_helper
- common_reports_api.tests.test_common_reports_api
- datasets_api.migrations.0001_initial
- datasets_api.migrations.0002_dataset_groups
- datasets_api.migrations.0003_alter_dataset_options
- datasets_api.migrations.0004_dataset_broken
- datasets_api.migrations.0005_dataset_dataset_name
- datasets_api.migrations.0006_datasethierarchy
- datasets_api.migrations.0007_datasethierarchy_direct
- datasets_api.migrations.0008_datasethierarchy_instance_id
- datasets_api.tests.conftest
- enrichment_api.enrichment_builder
- enrichment_api.enrichment_helper
- enrichment_api.enrichment_serializer
- enrichment_api.tests.conftest
- enrichment_api.tests.test_enrichment_api
- enrichment_api.tests.test_enrichment_builder
- enrichment_api.tests.test_enrichment_helper_simple
- enrichment_api.tests.test_enrichment_serializer
- enrichment_api.tests.test_t4c8_enrichment
- family_api.tests.test_family_api
- gene_profiles_api.tests.test_agp_api
- gene_profiles_api.tests.test_agp_api_configless
- gene_scores.tests.conftest
- gene_scores.tests.test_gene_scores
- gene_scores.tests.test_gene_scores_db
- gene_scores.tests.test_gene_scores_views
- gene_scores.tests.test_scores_partitions
- gene_sets.tests.test_gene_sets_api
- gene_view.tests.test_gene_view
- genomes_api.tests.test_gene_models_api
- genomic_scores_api.tests.test_genomic_scores_api
- genotype_browser.tests.conftest
- genotype_browser.tests.test_effect_types_download
- genotype_browser.tests.test_pheno_columns
- genotype_browser.tests.test_pheno_filters
- gpf.common_reports.common_report
- gpf.common_reports.denovo_report
- gpf.common_reports.family_counter
- gpf.common_reports.family_report
- gpf.common_reports.people_counter
- gpf.configuration.gpf_config_parser
- gpf.configuration.study_config_builder
- gpf.configuration.utils
- gpf.duckdb_storage.duckdb2_variants
- gpf.duckdb_storage.duckdb_connection_factory
- gpf.duckdb_storage.duckdb_genotype_storage
- gpf.duckdb_storage.duckdb_import_storage
- gpf.duckdb_storage.duckdb_legacy_genotype_storage
- gpf.duckdb_storage.duckdb_storage_config
- gpf.duckdb_storage.duckdb_storage_helpers
- gpf.duckdb_storage.duckdb_variants
- gpf.enrichment_tool.base_enrichment_background
- gpf.enrichment_tool.build_coding_length_enrichment_background
- gpf.enrichment_tool.build_ur_synonymous_enrichment_background
- gpf.enrichment_tool.enrichment_cache_builder
- gpf.enrichment_tool.enrichment_utils
- gpf.enrichment_tool.event_counters
- gpf.enrichment_tool.gene_weights_background
- gpf.enrichment_tool.genotype_helper
- gpf.enrichment_tool.resource_implementations.enrichment_resource_impl
- gpf.enrichment_tool.samocha_background
- gpf.gene_profile.convert_gene_profile_to_duckdb
- gpf.gene_profile.db
- gpf.gene_profile.exporter
- gpf.gene_profile.generate_gene_profile
- gpf.gene_profile.statistic
- gpf.gene_sets.denovo_gene_set_collection
- gpf.gene_sets.denovo_gene_set_helpers
- gpf.gene_sets.denovo_gene_sets_config
- gpf.gene_sets.denovo_gene_sets_db
- gpf.gene_sets.gene_sets_db
- gpf.genomic_scores.scores
- gpf.genotype_storage.genotype_storage
- gpf.genotype_storage.genotype_storage_genomic_context_cli
- gpf.genotype_storage.genotype_storage_registry
- gpf.gpf_instance.adjustments.adjust_command
- gpf.gpf_instance.adjustments.adjust_duckdb_storage
- gpf.gpf_instance.adjustments.adjust_impala_storage
- gpf.gpf_instance.adjustments.gpf_instance_adjustments
- gpf.gpf_instance.gpf_instance
- gpf.gpf_instance_plugin.gpf_instance_context_plugin
- gpf.import_tools.cli
- gpf.import_tools.import_tools
- gpf.inmemory_storage.annotation_serialization
- gpf.inmemory_storage.inmemory_genotype_storage
- gpf.inmemory_storage.inmemory_import_storage
- gpf.inmemory_storage.raw_variants
- gpf.parquet.helpers
- gpf.parquet.parquet_writer
- gpf.parquet.partition_descriptor
- gpf.parquet.schema2.annotate_schema2_parquet
- gpf.parquet.schema2.loader
- gpf.parquet.schema2.merge_parquet
- gpf.parquet.schema2.parquet_io
- gpf.parquet.schema2.processing_pipeline
- gpf.parquet.schema2.serializers
- gpf.parquet.schema2.variants_parquet_writer
- gpf.parquet_storage.storage
- gpf.pedigrees.drawing
- gpf.pedigrees.families_data
- gpf.pedigrees.family
- gpf.pedigrees.family_role_builder
- gpf.pedigrees.family_tag_builder
- gpf.pedigrees.layout
- gpf.pedigrees.loader
- gpf.pedigrees.pedigrees
- gpf.pedigrees.testing
- gpf.person_filters.person_filters
- gpf.person_sets.person_sets
- gpf.pheno.browser
- gpf.pheno.build_pheno_browser
- gpf.pheno.common
- gpf.pheno.db
- gpf.pheno.graphs
- gpf.pheno.import_tools
- gpf.pheno.pheno_data
- gpf.pheno.pheno_import
- gpf.pheno.prepare.measure_classifier
- gpf.pheno.prepare_data
- gpf.pheno.registry
- gpf.pheno.storage
- gpf.pheno.update_pheno_descriptions
- gpf.pheno.utils.commons
- gpf.pheno.utils.lin_regress
- gpf.pheno_tool.pheno_tool_adapter
- gpf.pheno_tool.tool
- gpf.query_variants.attribute_queries
- gpf.query_variants.base_query_variants
- gpf.query_variants.query_runners
- gpf.query_variants.sql.schema2.base_query_builder
- gpf.query_variants.sql.schema2.base_variants
- gpf.query_variants.sql.schema2.family_builder
- gpf.query_variants.sql.schema2.sql_query_builder
- gpf.query_variants.sql.schema2.summary_builder
- gpf.schema2_storage.schema2_import_storage
- gpf.schema2_storage.schema2_layout
- gpf.studies.study
- gpf.studies.variants_db
- gpf.testing.acgt_import
- gpf.testing.alla_import
- gpf.testing.foobar_import
- gpf.testing.import_helpers
- gpf.testing.setup_helpers
- gpf.testing.t4c8_import
- gpf.tools.dae2vcf
- gpf.tools.dataset_helpers
- gpf.tools.denovo2vcf
- gpf.tools.draw_pedigree
- gpf.tools.generate_common_report
- gpf.tools.generate_denovo_gene_sets
- gpf.tools.gpf_convert_study_config
- gpf.tools.gpf_validation_runner
- gpf.tools.grr_cache_repo
- gpf.tools.liftover_tools
- gpf.tools.ped2ped
- gpf.tools.reannotate_instance
- gpf.tools.simple_study_import
- gpf.tools.to_gpf_gene_models_format
- gpf.tools.vcf2tsv
- gpf.utils.testing
- gpf.utils.variant_utils
- gpf.variants.attributes
- gpf.variants.core
- gpf.variants.family_variant
- gpf.variants.variant
- gpf.variants_loaders.cnv.flexible_cnv_loader
- gpf.variants_loaders.cnv.loader
- gpf.variants_loaders.dae.loader
- gpf.variants_loaders.parquet.loader
- gpf.variants_loaders.raw.flexible_variant_loader
- gpf.variants_loaders.raw.loader
- gpf.variants_loaders.vcf.loader
- gpf.variants_loaders.vcf.serializer
- gpf_instance.apps
- gpf_instance.extension
- gpf_instance.gpf_instance
- gpf_instance.tests.test_genome_view
- gpf_instance.tests.test_version_api
- gpf_web.default_settings
- gpf_web.wdaemanage
- gpf_web.wgpf
- gpfjs.views
- measures_api.tests.test_measures_api
- person_sets_api.tests.test_person_sets_api
- pheno_browser_api.pheno_browser_helper
- pheno_tool_api.adapter
- pheno_tool_api.tests.test_pheno_tool_api
- query_state_save.migrations.0001_initial
- query_state_save.migrations.0002_auto_20190205_0736
- query_state_save.migrations.0003_querystate_origin_querystate_timestamp
- query_state_save.tests.conftest
- sentry.tests.test_sentry
- sentry.views
- studies.conftest
- studies.query_transformer
- studies.response_transformer
- studies.study_wrapper
- studies.tests.test_pheno_measures_columns
- studies.tests.test_query_transformer
- studies.tests.test_query_transformer_family_tags
- studies.tests.test_query_transformer_present_in_child_and_parent
- studies.tests.test_response_transformer_columns
- studies.tests.test_study_config_genotype_browser_columns
- studies.tests.test_study_group_person_sets_queries
- studies.tests.test_study_query_request
- studies.tests.test_study_wrapper
- studies.tests.test_study_wrapper_person_sets
- studies.tests.test_study_wrapper_queries
- studies.tests.test_study_wrapper_unique_variants_query
- user_queries.migrations.0001_initial
- users_api.management.commands.user_set_name
- users_api.management.commands.user_setpasswd
- users_api.management.commands.users_remove
- users_api.migrations.0001_initial
- users_api.migrations.0002_auto_20190424_0751
- users_api.migrations.0003_authenticationlog
- users_api.migrations.0004_resetpasswordcode_setpasswordcode_and_more
- users_api.migrations.0005_gpuserstate
- utils.authentication
- utils.datasets
- utils.email_regex
- utils.expand_gene_set
- utils.gene_sets
- utils.logger
- utils.pagination
- utils.password_requirements
- utils.query_params
- utils.streaming_response_util
- utils.testing