# pylint: disable=W0621,C0114,C0116,W0212,W0613
import pytest
download_columns = [
"family", "phenotype", "variant", "best", "fromparent", "inchild",
"effect", "count", "geneeffect", "effectdetails", "weights", "freq",
"continuous", "categorical", "ordinal", "raw",
]
summary_preview_columns = [
"variant", "effect", "weights", "freq", "effect",
"continuous", "categorical", "ordinal", "raw",
]
summary_download_columns = [
"variant", "effect", "weights", "freq", "effect",
"geneeffect", "effectdetails", "continuous",
"categorical", "ordinal", "raw",
]
[docs]
@pytest.fixture()
def preview_sources() -> list[dict]:
return [
{"source": "family", "format": "%s"},
{"source": "studyName", "format": "%s"},
{"source": "location", "format": "%s"},
{"source": "variant", "format": "%s"},
{"source": "pedigree", "format": "%s"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "LGD_rank", "format": "LGD %d"},
{"source": "RVIS_rank", "format": "RVIS %d"},
{"source": "pLI_rank", "format": "pLI %d"},
{"source": "SSC-freq", "format": "SSC %.2f %%"},
{"source": "EVS-freq", "format": "EVS %.2f %%"},
{"source": "E65-freq", "format": "E65 %.2f %%"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "instrument1.continuous", "role": "prb", "format": "%s"},
{"source": "instrument1.categorical", "role": "prb", "format": "%s"},
{"source": "instrument1.ordinal", "role": "prb", "format": "%s"},
{"source": "instrument1.raw", "role": "prb", "format": "%s"},
]
[docs]
@pytest.fixture()
def download_sources() -> list[dict]:
return [
{"name": "family id", "source": "family", "format": "%s"},
{"source": "studyName", "format": "%s"},
{"source": "phenotype", "format": "%s"},
{"source": "location", "format": "%s"},
{"source": "variant", "format": "%s"},
{"source": "bestSt", "format": "%s"},
{"source": "fromParentS", "format": "%s"},
{"source": "inChS", "format": "%s"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "counts", "format": "%s"},
{"source": "geneEffect", "format": "%s"},
{"source": "effectDetails", "format": "%s"},
{"source": "LGD_rank", "format": "LGD %d"},
{"source": "RVIS_rank", "format": "RVIS %d"},
{"source": "pLI_rank", "format": "pLI %d"},
{"source": "SSC-freq", "format": "SSC %.2f %%"},
{"source": "EVS-freq", "format": "EVS %.2f %%"},
{"source": "E65-freq", "format": "E65 %.2f %%"},
{"source": "instrument1.continuous", "role": "prb", "format": "%s"},
{"source": "instrument1.categorical", "role": "prb", "format": "%s"},
{"source": "instrument1.ordinal", "role": "prb", "format": "%s"},
{"source": "instrument1.raw", "role": "prb", "format": "%s"},
]
[docs]
@pytest.fixture()
def summary_preview_sources() -> list[dict]:
return [
{"source": "location", "format": "%s"},
{"source": "variant", "format": "%s"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "LGD_rank", "format": "LGD %d"},
{"source": "RVIS_rank", "format": "RVIS %d"},
{"source": "pLI_rank", "format": "pLI %d"},
{"source": "SSC-freq", "format": "SSC %.2f %%"},
{"source": "EVS-freq", "format": "EVS %.2f %%"},
{"source": "E65-freq", "format": "E65 %.2f %%"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "instrument1.continuous", "role": "prb", "format": "%s"},
{"source": "instrument1.categorical", "role": "prb", "format": "%s"},
{"source": "instrument1.ordinal", "role": "prb", "format": "%s"},
{"source": "instrument1.raw", "role": "prb", "format": "%s"},
]
[docs]
@pytest.fixture()
def summary_download_sources() -> list[dict]:
return [
{"source": "location", "format": "%s"},
{"source": "variant", "format": "%s"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "LGD_rank", "format": "LGD %d"},
{"source": "RVIS_rank", "format": "RVIS %d"},
{"source": "pLI_rank", "format": "pLI %d"},
{"source": "SSC-freq", "format": "SSC %.2f %%"},
{"source": "EVS-freq", "format": "EVS %.2f %%"},
{"source": "E65-freq", "format": "E65 %.2f %%"},
{"source": "worstEffect", "format": "%s"},
{"source": "genes", "format": "%s"},
{"source": "geneEffect", "format": "%s"},
{"source": "effectDetails", "format": "%s"},
{"source": "instrument1.continuous", "role": "prb", "format": "%s"},
{"source": "instrument1.categorical", "role": "prb", "format": "%s"},
{"source": "instrument1.ordinal", "role": "prb", "format": "%s"},
{"source": "instrument1.raw", "role": "prb", "format": "%s"},
]