dae.genomic_scores package

Subpackages

• dae.genomic_scores.tests package
  • Submodules
  • dae.genomic_scores.tests.test_genomic_scores_db module
  • Module contents

Submodules

dae.genomic_scores.scores module

class dae.genomic_scores.scores.GenomicScoresRegistry(scores: dict[str, ScoreDesc])

Bases: object

Genomic scores registry allowing access to genomic scores histograms.

static build_genomic_scores_registry(pipeline: AnnotationPipeline) → GenomicScoresRegistry

Build a genomic scores registry from an annotation pipeline.

get_scores() → list[tuple[str, ScoreDesc]]

Return all genomic scores histograms.

class dae.genomic_scores.scores.ScoreDesc(name: str, resource_id: str, source: str, hist: NullHistogram | CategoricalHistogram | NumberHistogram, description: str, help: str, small_values_desc: str | None, large_values_desc: str | None)

Bases: object

Data class to describe genomic scores in GenomicScoresDb.

description: str

static from_json(data: dict[str, Any]) → ScoreDesc

Build a ScoreDesc from a JSON.

help: str

hist: NullHistogram | CategoricalHistogram | NumberHistogram

large_values_desc: str | None

name: str

resource_id: str

small_values_desc: str | None

source: str

to_json() → dict[str, Any]

Module contents