Release Notes

  • 2024.7.1
    • Improvements in genomic position table performance

    • Initial support for 0-based genomic scores in genomic position table

    • Initial support for serialization of gene models in GTF format

    • Fix in handling of saved queries in GPFjs

  • 2024.7.0
    • Bump Python version to 3.11

    • Fix in gene profiles search for genes

    • Support for browser caching of GPF wdae requests

    • Support for style tag in GRR info pages resource description

    • Support for ZSTD compression of variants data blobs in schema2 parquet

    • Fixes in annotation pipeline construction

    • Fixes in support for bigWig format in genomic scores

    • Fixes in handling of selected dataset in GPFjs

    • Fixes of visual flickering of dataset selector dropdown in GPFjs

    • Fixes in handling of internal state in GPFjs

  • 2024.6.6
    • Update for GRR info pages for genomic scores, gene scores, gene models and reference genome

    • Demo annotators for external tools using batch mode annotation

    • Demo annotators for external tools using using GRR resources and batch mode annotation

    • Fixes and optimization for genotype variants query over schema2 parquet loader

    • Fix handling of bigWig resources in GRR

    • Fix home page search for a gene profile

    • Fix handling of gene browser input

  • 2024.6.5
    • Fix for GTF gene models parser

  • 2024.6.4
    • Initial support for batch mode in annotation pipeline and annotate columns tool

    • Fix for gene profiles state handling in GPFjs

    • Clean up and improvements in searchable dropdowns in GPFjs

  • 2024.6.3
    • Fix gene scores missing description in GRR info pages

    • DuckDb version bumpted to 1.0.0

    • Initial implementation of request caching in WDAE

    • Fix a minor issue in collapsable dropdown dataset selector

  • 2024.6.2
    • Initial support for BigWig genomic resources

    • Bump GPF dependencies

    • Fix handling of phenotype browser images

    • Improved gene models statistics

    • Improved gene models and reference genome info pages in GRR

  • 2024.6.1
    • Fix gene models GTF parser

    • Parallelization of phenotype data import tool

  • 2024.6.0
    • Fix in hadling annotation pipeline preamble in annotation documentation tool

    • Imrovements in annotation documentation tool

    • Support for quering genotye variants over Schema2 parquet loader

    • Improvements in genomic scores and gene scores info packages

    • Fix in handling studies without variants in GCP Schema2 genotype storage

    • Fix in family tags counter

    • Collapsable dropdown dataset selector

    • Fix phenotype tool legend

    • Fix the layout of histogram description in scores descriptions

  • 2024.5.3
    • Fix hanlding of genomic resources varsions in GRR home page

    • Support for multiple regression measures in phenotype databases

    • Resore basic liftover annotator

    • Fix in handling studies without variants in Impala Schema2 genotype storage

    • Improvments in handling annotation pipeline preamble section

    • Fix alignment of dataset names in GPF home page hierarchy

    • Fix handling of gene profiles column ordering

    • Fix families counter in dataset statistics families by pedigree page

  • 2024.5.2
    • Improved styling of annotation documentation generated by annote_doc

    • Fix handling of hidden datasets in GPF home page hierarchy

    • Bug fix for loading datasets in GPFjs

  • 2024.5.1
    • Annotation pipeline as genomic resource

    • Improvements in liftover annotator

    • Store column ordering in gene profiles state

    • Fix resizing of phenotype browser table

    • Source maps instrumentation of GPFjs build

  • 2024.5.0
    • Support for preamble in annotation pipeline

    • Support for genotype studies without variants

    • Improvements in loading dataset hierarchy performance

    • Full parquet datasets variants loader

    • Store gene profiles visible columns to state

    • Fix handling of invalid URLs