Release Notes
- 2024.8.2
Improvement of SQL query builder for family and summary variants in DuckDb genotype storage
Fix packaging of external VEP annotator plugin
Support for serialisation of additional attributes of family variants
Fix support for log-scale Y axis in categorical histograms
Fix loading of gene profiles search term from gene profiles state
- 2024.8.1
Fix caching of genotype data groups descriptions
Genomic position table optimization for bigWig resources
- 2024.8.0
Fix for pheno data import on clusters
Fix genomic scores histograms large and small value labels
Change genomic scores configuration to support column_name and column_index
Fix support for genomic scores with zero_based genomic position table
- 2024.7.8
Fix handling of bigWig resources with chromosome mapping in grr_manage
- 2024.7.7
Added unit tests for external VEP annotator plugin
Fix collection of study parents in gpf_wdae
Fix bigWig genomic position table fetch method
Fix annotation pipeline preamble
Fix gene browser input field behavior in GPFjs
Fix query cancelation on destroy of component in GPFjs
- 2024.7.6
Added web caching for GPF instance home and about pages
Fix handling of permissions for any_user` group in gpf_wdae
Fix gene profiles single gene search from home page
Clean up old dataset description cache in GPFjs
Fix search query cancelation in phenotype browser
Fix handling of description for annonymous users in GPFjs
Fix in dataset selector dropdown in GPFjs
- 2024.7.5
Performance improvements in calculation of access rights for datasets
Fixes in datasets routing in GPFjs
Added UI for resetting gene profiles state
- 2024.7.4
Fixes in pheno measures dropdown selector for genotype browser and pheno tool
- 2024.7.3
Bump versions of django dependencies
Fix handling of phenotype data groups
Fix sorting of pheno browser table
Gene profiles user interface state store in user profile
Improvement in enrichment tool results display
Fixes in gpf_validation_runner tool
Fixes for serialization of gene models in GTF format
Fix chromosome mapping for bigWig genomic position table
Fix in phenotype tool user interface controls
Fix in gene browser user interface coding only control
Fix in histogram sliders user interface
Fixes for handling of selected dataset in GPFjs internal state
New pheno measures dropdown selector for genotype browser and pheno tool
- 2024.7.2
Tool for drawing score resources histograms draw_score_histograms
Gene sets clean up and fixes
Fix handling of internal buffer of tabix genomic position table
- 2024.7.1
Improvements in genomic position table performance
Initial support for 0-based genomic scores in genomic position table
Initial support for serialization of gene models in GTF format
Fix in handling of saved queries in GPFjs
- 2024.7.0
Bump Python version to 3.11
Fix in gene profiles search for genes
Support for browser caching of GPF wdae requests
Support for style tag in GRR info pages resource description
Support for ZSTD compression of variants data blobs in schema2 parquet
Fixes in annotation pipeline construction
Fixes in support for bigWig format in genomic scores
Fixes in handling of selected dataset in GPFjs
Fixes of visual flickering of dataset selector dropdown in GPFjs
Fixes in handling of internal state in GPFjs
- 2024.6.6
Update for GRR info pages for genomic scores, gene scores, gene models and reference genome
Demo annotators for external tools using batch mode annotation
Demo annotators for external tools using using GRR resources and batch mode annotation
Fixes and optimization for genotype variants query over schema2 parquet loader
Fix handling of bigWig resources in GRR
Fix home page search for a gene profile
Fix handling of gene browser input
- 2024.6.5
Fix for GTF gene models parser
- 2024.6.4
Initial support for batch mode in annotation pipeline and annotate columns tool
Fix for gene profiles state handling in GPFjs
Clean up and improvements in searchable dropdowns in GPFjs
- 2024.6.3
Fix gene scores missing description in GRR info pages
DuckDb version bumpted to 1.0.0
Initial implementation of request caching in WDAE
Fix a minor issue in collapsable dropdown dataset selector
- 2024.6.2
Initial support for BigWig genomic resources
Bump GPF dependencies
Fix handling of phenotype browser images
Improved gene models statistics
Improved gene models and reference genome info pages in GRR
- 2024.6.1
Fix gene models GTF parser
Parallelization of phenotype data import tool
- 2024.6.0
Fix in hadling annotation pipeline preamble in annotation documentation tool
Imrovements in annotation documentation tool
Support for quering genotye variants over Schema2 parquet loader
Improvements in genomic scores and gene scores info packages
Fix in handling studies without variants in GCP Schema2 genotype storage
Fix in family tags counter
Collapsable dropdown dataset selector
Fix phenotype tool legend
Fix the layout of histogram description in scores descriptions
- 2024.5.3
Fix hanlding of genomic resources varsions in GRR home page
Support for multiple regression measures in phenotype databases
Resore basic liftover annotator
Fix in handling studies without variants in Impala Schema2 genotype storage
Improvments in handling annotation pipeline preamble section
Fix alignment of dataset names in GPF home page hierarchy
Fix handling of gene profiles column ordering
Fix families counter in dataset statistics families by pedigree page
- 2024.5.2
Improved styling of annotation documentation generated by annote_doc
Fix handling of hidden datasets in GPF home page hierarchy
Bug fix for loading datasets in GPFjs
- 2024.5.1
Annotation pipeline as genomic resource
Improvements in liftover annotator
Store column ordering in gene profiles state
Fix resizing of phenotype browser table
Source maps instrumentation of GPFjs build
- 2024.5.0
Support for preamble in annotation pipeline
Support for genotype studies without variants
Improvements in loading dataset hierarchy performance
Full parquet datasets variants loader
Store gene profiles visible columns to state
Fix handling of invalid URLs