wdae Interface
- Common reports api
- Datasets api
- Enrichment api
- Family api
- Gene scores
- Gene sets
- Gene view
- Genomes api
- Genomic scores api
- Genotype browser
- Gpf instance
- Groups api
- Measures api
- Person sets api
- Pheno browser api
- Pheno tool api
- Query state save
- Sentry
- User queries
- Users api
- wdae
- common_reports_api package
- conftest module
admin()
admin_client()
anonymous_client()
datasets()
enrichment_grr()
hundred_groups()
hundred_users()
oauth_app()
sample_dataset()
session_t4c8_wgpf_instance()
t4c8_dataset()
t4c8_instance()
t4c8_query_transformer()
t4c8_response_transformer()
t4c8_study_1()
t4c8_study_1_wrapper()
t4c8_study_2()
t4c8_study_2_wrapper()
t4c8_wgpf()
t4c8_wgpf_instance()
tokens()
user()
user_client()
user_without_password()
- datasets_api package
- Subpackages
- datasets_api.migrations package
- Submodules
- datasets_api.migrations.0001_initial module
- datasets_api.migrations.0002_dataset_groups module
- datasets_api.migrations.0003_alter_dataset_options module
- datasets_api.migrations.0004_dataset_broken module
- datasets_api.migrations.0005_dataset_dataset_name module
- datasets_api.migrations.0006_datasethierarchy module
- datasets_api.migrations.0007_datasethierarchy_direct module
- datasets_api.migrations.0008_datasethierarchy_instance_id module
- Module contents
- datasets_api.tests package
- datasets_api.migrations package
- Submodules
- datasets_api.models module
Dataset
DatasetHierarchy
DatasetHierarchy.DoesNotExist
DatasetHierarchy.MultipleObjectsReturned
DatasetHierarchy.add_relation()
DatasetHierarchy.ancestor
DatasetHierarchy.ancestor_id
DatasetHierarchy.clear()
DatasetHierarchy.descendant
DatasetHierarchy.descendant_id
DatasetHierarchy.direct
DatasetHierarchy.get_children()
DatasetHierarchy.get_direct_datasets_parents()
DatasetHierarchy.get_parents()
DatasetHierarchy.id
DatasetHierarchy.instance_id
DatasetHierarchy.is_study()
DatasetHierarchy.objects
- datasets_api.permissions module
IsDatasetAllowed
add_group_perm_to_dataset()
add_group_perm_to_user()
get_allowed_genotype_studies()
get_dataset_groups()
get_dataset_info()
get_directly_allowed_genotype_data()
get_instance_timestamp_etag()
get_permissions_etag()
get_user_groups()
get_wdae_children()
get_wdae_dataset()
get_wdae_parents()
handle_partial_permissions()
user_has_permission()
- datasets_api.urls module
- datasets_api.views module
- Module contents
- Subpackages
- enrichment_api package
- family_api package
- gene_profiles_api package
- gene_scores package
- gene_sets package
- gene_view package
- genomes_api package
- genomic_scores_api package
- genotype_browser package
- gpf_instance package
- gpfjs package
- groups_api package
- Subpackages
- Submodules
- groups_api.serializers module
- groups_api.urls module
- groups_api.views module
GroupsViewSet
GroupsViewSet.authentication_classes
GroupsViewSet.basename
GroupsViewSet.description
GroupsViewSet.detail
GroupsViewSet.filter_backends
GroupsViewSet.get_queryset()
GroupsViewSet.get_serializer_class()
GroupsViewSet.lookup_field
GroupsViewSet.name
GroupsViewSet.permission_classes
GroupsViewSet.search_fields
GroupsViewSet.serializer_class
GroupsViewSet.suffix
- Module contents
- measures_api package
- person_sets_api package
- pheno_browser_api package
- pheno_tool_api package
- query_base package
- query_state_save package
- sentry package
- studies package
- Subpackages
- studies.tests package
- Submodules
- studies.tests.test_pheno_measures_columns module
- studies.tests.test_query_transformer_family_tags module
- studies.tests.test_query_transformer_present_in_child_and_parent module
- studies.tests.test_response_transformer_columns module
- studies.tests.test_study_config_genotype_browser_columns module
- studies.tests.test_study_group_person_sets_queries module
- studies.tests.test_study_query_request module
- studies.tests.test_study_wrapper module
- studies.tests.test_study_wrapper_queries module
- Module contents
- studies.tests package
- Submodules
- studies.query_transformer module
- studies.response_transformer module
ResponseTransformer
ResponseTransformer.PHENOTYPE_ATTRS
ResponseTransformer.SPECIAL_ATTRS
ResponseTransformer.STREAMING_CHUNK_SIZE
ResponseTransformer.build_variant_row()
ResponseTransformer.transform_gene_view_summary_variant()
ResponseTransformer.transform_gene_view_summary_variant_download()
ResponseTransformer.variant_transformer()
get_or_create_response_transformer()
make_response_transformer()
members_in_order_get_family_structure()
- studies.study_wrapper module
QueryTransformerProtocol
ResponseTransformerProtocol
WDAEAbstractStudy
WDAEAbstractStudy.config
WDAEAbstractStudy.config_columns
WDAEAbstractStudy.description
WDAEAbstractStudy.families
WDAEAbstractStudy.genotype_data
WDAEAbstractStudy.get_children_ids()
WDAEAbstractStudy.has_pheno_data
WDAEAbstractStudy.is_genotype
WDAEAbstractStudy.is_group
WDAEAbstractStudy.is_phenotype
WDAEAbstractStudy.make_config()
WDAEAbstractStudy.name
WDAEAbstractStudy.parents
WDAEAbstractStudy.person_set_collections
WDAEAbstractStudy.phenotype_data
WDAEAbstractStudy.query_variants_wdae_streaming()
WDAEAbstractStudy.study_id
WDAEStudy
WDAEStudyGroup
get_clean_config()
remove_none_values()
- Module contents
- Subpackages
- user_queries package
- users_api package
- Subpackages
- users_api.management package
- users_api.migrations package
- users_api.tests package
- Submodules
- users_api.tests.conftest module
- users_api.tests.test_commands module
- users_api.tests.test_commands_datasets module
- users_api.tests.test_federation_credentials_api module
- users_api.tests.test_users_api module
- users_api.tests.test_users_authentication module
- users_api.tests.test_users_groups module
- users_api.tests.test_users_researcher_registration module
- users_api.tests.test_users_rest module
- users_api.tests.test_users_with_password module
- users_api.tests.test_users_without_password module
- Module contents
- Submodules
- users_api.forms module
- users_api.models module
AuthenticationLog
AuthenticationLog.DoesNotExist
AuthenticationLog.MultipleObjectsReturned
AuthenticationLog.email
AuthenticationLog.failed_attempt
AuthenticationLog.get_last_login_for()
AuthenticationLog.get_locked_out_error()
AuthenticationLog.get_next_by_time()
AuthenticationLog.get_previous_by_time()
AuthenticationLog.get_remaining_lockout_time()
AuthenticationLog.id
AuthenticationLog.is_user_locked_out()
AuthenticationLog.log_authentication_attempt()
AuthenticationLog.objects
AuthenticationLog.time
BaseVerificationCode
BaseVerificationCode.Meta
BaseVerificationCode.create()
BaseVerificationCode.created_at
BaseVerificationCode.get_code()
BaseVerificationCode.get_next_by_created_at()
BaseVerificationCode.get_previous_by_created_at()
BaseVerificationCode.path
BaseVerificationCode.user
BaseVerificationCode.user_id
BaseVerificationCode.validate()
GpUserState
ResetPasswordCode
ResetPasswordCode.DoesNotExist
ResetPasswordCode.MultipleObjectsReturned
ResetPasswordCode.created_at
ResetPasswordCode.get_next_by_created_at()
ResetPasswordCode.get_previous_by_created_at()
ResetPasswordCode.id
ResetPasswordCode.objects
ResetPasswordCode.path
ResetPasswordCode.user
ResetPasswordCode.user_id
ResetPasswordCode.validate()
SetPasswordCode
SetPasswordCode.DoesNotExist
SetPasswordCode.MultipleObjectsReturned
SetPasswordCode.created_at
SetPasswordCode.get_next_by_created_at()
SetPasswordCode.get_previous_by_created_at()
SetPasswordCode.id
SetPasswordCode.objects
SetPasswordCode.path
SetPasswordCode.user
SetPasswordCode.user_id
SetPasswordCode.validate()
WdaeUser
WdaeUser.DoesNotExist
WdaeUser.MultipleObjectsReturned
WdaeUser.REQUIRED_FIELDS
WdaeUser.SUPERUSER_GROUP
WdaeUser.UMLIMITED_DOWNLOAD_GROUP
WdaeUser.USERNAME_FIELD
WdaeUser.allowed_datasets
WdaeUser.auth_token
WdaeUser.change_password()
WdaeUser.date_joined
WdaeUser.deauthenticate()
WdaeUser.email
WdaeUser.email_user()
WdaeUser.gpuserstate
WdaeUser.groups
WdaeUser.has_unlimited_download
WdaeUser.id
WdaeUser.is_active
WdaeUser.is_staff
WdaeUser.is_superuser
WdaeUser.last_login
WdaeUser.name
WdaeUser.oauth2_provider_accesstoken
WdaeUser.oauth2_provider_application
WdaeUser.oauth2_provider_grant
WdaeUser.oauth2_provider_idtoken
WdaeUser.oauth2_provider_refreshtoken
WdaeUser.objects
WdaeUser.password
WdaeUser.register_preexisting_user()
WdaeUser.reset_password()
WdaeUser.resetpasswordcode
WdaeUser.set_password()
WdaeUser.set_unusable_password()
WdaeUser.setpasswordcode
WdaeUser.user_permissions
WdaeUser.userquery_set
WdaeUserManager
csrf_clear()
get_default_application()
group_post_delete()
group_pre_delete()
send_already_existing_email()
send_reset_email()
send_reset_inactive_acc_email()
send_verif_email()
staff_update()
- users_api.serializers module
- users_api.urls module
- users_api.validators module
- users_api.views module
BasePasswordView
FederationCredentials
ForgotPassword
RESTLoginView
ResetPassword
SetPassword
UserGpStateView
UserViewSet
UserViewSet.authentication_classes
UserViewSet.basename
UserViewSet.create()
UserViewSet.description
UserViewSet.destroy()
UserViewSet.detail
UserViewSet.filter_backends
UserViewSet.get_serializer_class()
UserViewSet.list()
UserViewSet.name
UserViewSet.partial_update()
UserViewSet.password_reset()
UserViewSet.permission_classes
UserViewSet.queryset
UserViewSet.retrieve()
UserViewSet.search_fields
UserViewSet.serializer_class
UserViewSet.streaming_search()
UserViewSet.suffix
UserViewSet.update()
WdaeLoginView
change_password()
check_verif_code()
get_user_info()
iterator_to_json()
logout()
register()
- Module contents
- Subpackages
- utils package
- Submodules
- utils.authentication module
- utils.datasets module
- utils.email_regex module
- utils.expand_gene_set module
- utils.gene_sets module
- utils.logger module
- utils.pagination module
- utils.password_requirements module
- utils.query_params module
- utils.streaming_response_util module
- utils.testing module
- Module contents
- wdae package
- Submodules
- wdae.default_settings module
- wdae.eager_settings module
- wdae.gunicorn_settings module
- wdae.remote_settings module
- wdae.settings module
- wdae.silk_settings module
- wdae.test_settings module
- wdae.urls module
- wdae.wdaemanage module
- wdae.wgpf module
- wdae.wgpf_settings module
- wdae.wsgi module
- Module contents