wdae Interface
- Common reports api
- Datasets api
- Enrichment api
- Family api
- Gene scores
- Gene sets
- Gene view
- Genomes api
- Genomic scores api
- Genotype browser
- Gpf instance
- Groups api
- Measures api
- Person sets api
- Pheno browser api
- Pheno tool api
- Query state save
- Sentry
- User queries
- Users api
- wdae
- common_reports_api package
- conftest module
admin()admin_client()anonymous_client()datasets()enrichment_grr()hundred_groups()hundred_users()oauth_app()sample_dataset()session_t4c8_wgpf_instance()t4c8_dataset()t4c8_instance()t4c8_query_transformer()t4c8_response_transformer()t4c8_study_1()t4c8_study_1_wrapper()t4c8_study_2()t4c8_study_2_wrapper()t4c8_wgpf()t4c8_wgpf_instance()tokens()user()user_client()user_without_password()
- datasets_api package
- Subpackages
- datasets_api.migrations package
- Submodules
- datasets_api.migrations.0001_initial module
- datasets_api.migrations.0002_dataset_groups module
- datasets_api.migrations.0003_alter_dataset_options module
- datasets_api.migrations.0004_dataset_broken module
- datasets_api.migrations.0005_dataset_dataset_name module
- datasets_api.migrations.0006_datasethierarchy module
- datasets_api.migrations.0007_datasethierarchy_direct module
- datasets_api.migrations.0008_datasethierarchy_instance_id module
- Module contents
- datasets_api.tests package
- datasets_api.migrations package
- Submodules
- datasets_api.models module
DatasetDatasetHierarchyDatasetHierarchy.DoesNotExistDatasetHierarchy.MultipleObjectsReturnedDatasetHierarchy.add_relation()DatasetHierarchy.ancestorDatasetHierarchy.ancestor_idDatasetHierarchy.clear()DatasetHierarchy.descendantDatasetHierarchy.descendant_idDatasetHierarchy.directDatasetHierarchy.get_children()DatasetHierarchy.get_direct_datasets_parents()DatasetHierarchy.get_parents()DatasetHierarchy.idDatasetHierarchy.instance_idDatasetHierarchy.is_study()DatasetHierarchy.objects
- datasets_api.permissions module
IsDatasetAllowedadd_group_perm_to_dataset()add_group_perm_to_user()get_allowed_genotype_studies()get_dataset_groups()get_dataset_info()get_directly_allowed_genotype_data()get_instance_timestamp_etag()get_permissions_etag()get_user_groups()get_wdae_children()get_wdae_dataset()get_wdae_parents()handle_partial_permissions()user_has_permission()
- datasets_api.urls module
- datasets_api.views module
- Module contents
- Subpackages
- enrichment_api package
- family_api package
- gene_profiles_api package
- gene_scores package
- gene_sets package
- gene_view package
- genomes_api package
- genomic_scores_api package
- genotype_browser package
- gpf_instance package
- gpfjs package
- groups_api package
- Subpackages
- Submodules
- groups_api.serializers module
- groups_api.urls module
- groups_api.views module
GroupsViewSetGroupsViewSet.authentication_classesGroupsViewSet.basenameGroupsViewSet.descriptionGroupsViewSet.detailGroupsViewSet.filter_backendsGroupsViewSet.get_queryset()GroupsViewSet.get_serializer_class()GroupsViewSet.lookup_fieldGroupsViewSet.nameGroupsViewSet.permission_classesGroupsViewSet.search_fieldsGroupsViewSet.serializer_classGroupsViewSet.suffix
- Module contents
- measures_api package
- person_sets_api package
- pheno_browser_api package
- pheno_tool_api package
- query_base package
- query_state_save package
- sentry package
- studies package
- Subpackages
- studies.tests package
- Submodules
- studies.tests.test_pheno_measures_columns module
- studies.tests.test_query_transformer_family_tags module
- studies.tests.test_query_transformer_present_in_child_and_parent module
- studies.tests.test_response_transformer_columns module
- studies.tests.test_study_config_genotype_browser_columns module
- studies.tests.test_study_group_person_sets_queries module
- studies.tests.test_study_query_request module
- studies.tests.test_study_wrapper module
- studies.tests.test_study_wrapper_queries module
- Module contents
- studies.tests package
- Submodules
- studies.query_transformer module
- studies.response_transformer module
ResponseTransformerResponseTransformer.PHENOTYPE_ATTRSResponseTransformer.SPECIAL_ATTRSResponseTransformer.STREAMING_CHUNK_SIZEResponseTransformer.build_variant_row()ResponseTransformer.transform_gene_view_summary_variant()ResponseTransformer.transform_gene_view_summary_variant_download()ResponseTransformer.variant_transformer()
get_or_create_response_transformer()make_response_transformer()members_in_order_get_family_structure()
- studies.study_wrapper module
QueryTransformerProtocolResponseTransformerProtocolWDAEAbstractStudyWDAEAbstractStudy.configWDAEAbstractStudy.config_columnsWDAEAbstractStudy.descriptionWDAEAbstractStudy.familiesWDAEAbstractStudy.genotype_dataWDAEAbstractStudy.get_children_ids()WDAEAbstractStudy.has_pheno_dataWDAEAbstractStudy.is_genotypeWDAEAbstractStudy.is_groupWDAEAbstractStudy.is_phenotypeWDAEAbstractStudy.make_config()WDAEAbstractStudy.nameWDAEAbstractStudy.parentsWDAEAbstractStudy.person_set_collectionsWDAEAbstractStudy.phenotype_dataWDAEAbstractStudy.query_variants_wdae_streaming()WDAEAbstractStudy.study_id
WDAEStudyWDAEStudyGroupget_clean_config()remove_none_values()
- Module contents
- Subpackages
- user_queries package
- users_api package
- Subpackages
- users_api.management package
- users_api.migrations package
- users_api.tests package
- Submodules
- users_api.tests.conftest module
- users_api.tests.test_commands module
- users_api.tests.test_commands_datasets module
- users_api.tests.test_federation_credentials_api module
- users_api.tests.test_users_api module
- users_api.tests.test_users_authentication module
- users_api.tests.test_users_groups module
- users_api.tests.test_users_researcher_registration module
- users_api.tests.test_users_rest module
- users_api.tests.test_users_with_password module
- users_api.tests.test_users_without_password module
- Module contents
- Submodules
- users_api.forms module
- users_api.models module
AuthenticationLogAuthenticationLog.DoesNotExistAuthenticationLog.MultipleObjectsReturnedAuthenticationLog.emailAuthenticationLog.failed_attemptAuthenticationLog.get_last_login_for()AuthenticationLog.get_locked_out_error()AuthenticationLog.get_next_by_time()AuthenticationLog.get_previous_by_time()AuthenticationLog.get_remaining_lockout_time()AuthenticationLog.idAuthenticationLog.is_user_locked_out()AuthenticationLog.log_authentication_attempt()AuthenticationLog.objectsAuthenticationLog.time
BaseVerificationCodeBaseVerificationCode.MetaBaseVerificationCode.create()BaseVerificationCode.created_atBaseVerificationCode.get_code()BaseVerificationCode.get_next_by_created_at()BaseVerificationCode.get_previous_by_created_at()BaseVerificationCode.pathBaseVerificationCode.userBaseVerificationCode.user_idBaseVerificationCode.validate()
GpUserStateResetPasswordCodeResetPasswordCode.DoesNotExistResetPasswordCode.MultipleObjectsReturnedResetPasswordCode.created_atResetPasswordCode.get_next_by_created_at()ResetPasswordCode.get_previous_by_created_at()ResetPasswordCode.idResetPasswordCode.objectsResetPasswordCode.pathResetPasswordCode.userResetPasswordCode.user_idResetPasswordCode.validate()
SetPasswordCodeSetPasswordCode.DoesNotExistSetPasswordCode.MultipleObjectsReturnedSetPasswordCode.created_atSetPasswordCode.get_next_by_created_at()SetPasswordCode.get_previous_by_created_at()SetPasswordCode.idSetPasswordCode.objectsSetPasswordCode.pathSetPasswordCode.userSetPasswordCode.user_idSetPasswordCode.validate()
WdaeUserWdaeUser.DoesNotExistWdaeUser.MultipleObjectsReturnedWdaeUser.REQUIRED_FIELDSWdaeUser.SUPERUSER_GROUPWdaeUser.UMLIMITED_DOWNLOAD_GROUPWdaeUser.USERNAME_FIELDWdaeUser.allowed_datasetsWdaeUser.auth_tokenWdaeUser.change_password()WdaeUser.date_joinedWdaeUser.deauthenticate()WdaeUser.emailWdaeUser.email_user()WdaeUser.gpuserstateWdaeUser.groupsWdaeUser.has_unlimited_downloadWdaeUser.idWdaeUser.is_activeWdaeUser.is_staffWdaeUser.is_superuserWdaeUser.last_loginWdaeUser.nameWdaeUser.oauth2_provider_accesstokenWdaeUser.oauth2_provider_applicationWdaeUser.oauth2_provider_grantWdaeUser.oauth2_provider_idtokenWdaeUser.oauth2_provider_refreshtokenWdaeUser.objectsWdaeUser.passwordWdaeUser.register_preexisting_user()WdaeUser.reset_password()WdaeUser.resetpasswordcodeWdaeUser.set_password()WdaeUser.set_unusable_password()WdaeUser.setpasswordcodeWdaeUser.user_permissionsWdaeUser.userquery_set
WdaeUserManagercsrf_clear()get_default_application()group_post_delete()group_pre_delete()send_already_existing_email()send_reset_email()send_reset_inactive_acc_email()send_verif_email()staff_update()
- users_api.serializers module
- users_api.urls module
- users_api.validators module
- users_api.views module
BasePasswordViewFederationCredentialsForgotPasswordRESTLoginViewResetPasswordSetPasswordUserGpStateViewUserViewSetUserViewSet.authentication_classesUserViewSet.basenameUserViewSet.create()UserViewSet.descriptionUserViewSet.destroy()UserViewSet.detailUserViewSet.filter_backendsUserViewSet.get_serializer_class()UserViewSet.list()UserViewSet.nameUserViewSet.partial_update()UserViewSet.password_reset()UserViewSet.permission_classesUserViewSet.querysetUserViewSet.retrieve()UserViewSet.search_fieldsUserViewSet.serializer_classUserViewSet.streaming_search()UserViewSet.suffixUserViewSet.update()
WdaeLoginViewchange_password()check_verif_code()get_user_info()iterator_to_json()logout()register()
- Module contents
- Subpackages
- utils package
- Submodules
- utils.authentication module
- utils.datasets module
- utils.email_regex module
- utils.expand_gene_set module
- utils.gene_sets module
- utils.logger module
- utils.pagination module
- utils.password_requirements module
- utils.query_params module
- utils.streaming_response_util module
- utils.testing module
- Module contents
- wdae package
- Submodules
- wdae.default_settings module
- wdae.eager_settings module
- wdae.gunicorn_settings module
- wdae.remote_settings module
- wdae.settings module
- wdae.silk_settings module
- wdae.test_settings module
- wdae.urls module
- wdae.wdaemanage module
- wdae.wgpf module
- wdae.wgpf_settings module
- wdae.wsgi module
- Module contents