GPF: Genotypes and Phenotypes in Families
  • GPF User Interface
  • GPF Administration
  • GPF Development
    • Release Notes
    • dae Interface
      • Genomic Resources
      • Annotation
      • Effect Annotation
        • Classes and Functions
      • Genomic Variants
      • Pedigrees Tools
      • Variants Loaders
      • Import Tools
      • Genotype Data Parquet Writers
      • Query Genomic Variants
      • Genotype Storage
      • In-Memory Genotype Storage
      • Configuration
      • Genotype Data
      • Phenotype Data
      • Phenotype tool
      • Enrichment Tool
      • dae
    • wdae Interface
GPF: Genotypes and Phenotypes in Families
  • GPF Development
  • dae Interface
  • Effect Annotation
  • View page source

Effect Annotation

Classes and Functions

  • dae.effect_annotation package
    • Subpackages
      • dae.effect_annotation.effect_checkers package
    • Submodules
    • dae.effect_annotation.annotation_effects module
      • get_effect_types()
      • get_effect_types_set()
    • dae.effect_annotation.annotation_request module
      • BaseAnnotationRequest
      • NegativeStrandAnnotationRequest
      • PositiveStrandAnnotationRequest
    • dae.effect_annotation.annotator module
      • AnnotationRequestFactory
      • EffectAnnotator
    • dae.effect_annotation.cli module
      • AnnotationAttributes
      • EffectAnnotatorBuilder
      • VariantColumnInputFile
      • VariantColumnOutputFile
      • cli_columns()
      • cli_vcf()
    • dae.effect_annotation.effect module
      • AlleleEffects
      • AnnotationEffect
      • EffectFactory
      • EffectGene
      • EffectTranscript
      • EffectTypesMixin
      • expand_effect_types()
      • gd2str()
      • ge2str()
      • gene_effect_get_genes()
      • gene_effect_get_genes_worst()
      • gene_effect_get_worst_effect()
    • dae.effect_annotation.gene_codes module
      • NuclearCode
    • dae.effect_annotation.variant module
      • Variant
    • Module contents
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