Effect Annotation

Classes and Functions

• dae.effect_annotation package
  • Subpackages
    • dae.effect_annotation.effect_checkers package
  • Submodules
  • dae.effect_annotation.annotation_effects module
    • get_effect_types()
    • get_effect_types_set()
  • dae.effect_annotation.annotation_request module
    • BaseAnnotationRequest
    • NegativeStrandAnnotationRequest
    • PositiveStrandAnnotationRequest
  • dae.effect_annotation.annotator module
    • AnnotationRequestFactory
    • EffectAnnotator
  • dae.effect_annotation.cli module
    • AnnotationAttributes
    • EffectAnnotatorBuilder
    • VariantColumnInputFile
    • VariantColumnOutputFile
    • cli_columns()
    • cli_vcf()
  • dae.effect_annotation.effect module
    • AlleleEffects
    • AnnotationEffect
    • EffectFactory
    • EffectGene
    • EffectTranscript
    • EffectTypesMixin
    • expand_effect_types()
    • gd2str()
    • ge2str()
    • gene_effect_get_genes()
    • gene_effect_get_genes_worst()
    • gene_effect_get_worst_effect()
  • dae.effect_annotation.gene_codes module
    • NuclearCode
  • dae.effect_annotation.variant module
    • Variant
  • Module contents