dae
- dae package
- Subpackages
- dae.annotation package
- Submodules
- dae.annotation.annotatable module
- dae.annotation.annotate_columns module
- dae.annotation.annotate_doc module
- dae.annotation.annotate_schema2_parquet module
- dae.annotation.annotate_utils module
- dae.annotation.annotate_vcf module
- dae.annotation.annotation_config module
- dae.annotation.annotation_factory module
- dae.annotation.annotation_pipeline module
- dae.annotation.annotator_base module
- dae.annotation.cnv_collection_annotator module
- dae.annotation.debug_annotator module
- dae.annotation.docker_annotator module
- dae.annotation.effect_annotator module
- dae.annotation.format_handlers module
- dae.annotation.gene_score_annotator module
- dae.annotation.gene_set_annotator module
- dae.annotation.genomic_context module
- dae.annotation.liftover_annotator module
- dae.annotation.normalize_allele_annotator module
- dae.annotation.parquet module
- dae.annotation.reannotate_instance module
- dae.annotation.record_to_annotatable module
- dae.annotation.score_annotator module
- dae.annotation.simple_effect_annotator module
- Module contents
- dae.common_reports package
- dae.configuration package
- dae.dask package
- dae.duckdb_storage package
- Submodules
- dae.duckdb_storage.duckdb2_variants module
- dae.duckdb_storage.duckdb_connection_factory module
- dae.duckdb_storage.duckdb_genotype_storage module
- dae.duckdb_storage.duckdb_import_storage module
- dae.duckdb_storage.duckdb_legacy_genotype_storage module
- dae.duckdb_storage.duckdb_storage_config module
- dae.duckdb_storage.duckdb_storage_helpers module
- dae.duckdb_storage.duckdb_variants module
- Module contents
- dae.effect_annotation package
- Subpackages
- Submodules
- dae.effect_annotation.annotation_effects module
- dae.effect_annotation.annotation_request module
- dae.effect_annotation.annotator module
- dae.effect_annotation.cli module
- dae.effect_annotation.effect module
- dae.effect_annotation.gene_codes module
- dae.effect_annotation.variant module
- Module contents
- dae.enrichment_tool package
- Subpackages
- Submodules
- dae.enrichment_tool.base_enrichment_background module
- dae.enrichment_tool.build_coding_length_enrichment_background module
- dae.enrichment_tool.build_ur_synonymous_enrichment_background module
- dae.enrichment_tool.enrichment_builder module
- dae.enrichment_tool.enrichment_cache_builder module
- dae.enrichment_tool.enrichment_helper module
- dae.enrichment_tool.enrichment_serializer module
- dae.enrichment_tool.event_counters module
- dae.enrichment_tool.gene_weights_background module
- dae.enrichment_tool.genotype_helper module
- dae.enrichment_tool.samocha_background module
- Module contents
- dae.gene_profile package
- dae.gene_scores package
- dae.gene_sets package
- dae.genomic_resources package
- Subpackages
- Submodules
- dae.genomic_resources.aggregators module
- dae.genomic_resources.cached_repository module
- dae.genomic_resources.cli module
- dae.genomic_resources.draw_score_histograms module
- dae.genomic_resources.fsspec_protocol module
- dae.genomic_resources.genomic_context module
- dae.genomic_resources.genomic_context_cli module
- dae.genomic_resources.genomic_scores module
- dae.genomic_resources.group_repository module
- dae.genomic_resources.histogram module
- dae.genomic_resources.liftover_chain module
- dae.genomic_resources.reference_genome module
- dae.genomic_resources.repository module
- dae.genomic_resources.repository_factory module
- dae.genomic_resources.resource_implementation module
- dae.genomic_resources.testing module
- dae.genomic_resources.variant_utils module
- Module contents
- dae.genomic_scores package
- dae.genotype_storage package
- dae.gpf_instance package
- dae.gpf_instance_plugin package
- dae.import_tools package
- dae.inmemory_storage package
- dae.parquet package
- dae.parquet_storage package
- dae.pedigrees package
- Submodules
- dae.pedigrees.drawing module
- dae.pedigrees.families_data module
- dae.pedigrees.family module
- dae.pedigrees.family_role_builder module
- dae.pedigrees.family_tag_builder module
- dae.pedigrees.layout module
- dae.pedigrees.loader module
- dae.pedigrees.pedigrees module
- dae.pedigrees.testing module
- Module contents
- dae.person_filters package
- dae.person_sets package
- dae.pheno package
- Subpackages
- Submodules
- dae.pheno.browser module
- dae.pheno.build_pheno_browser module
- dae.pheno.common module
- dae.pheno.db module
- dae.pheno.graphs module
- dae.pheno.import_tools module
- dae.pheno.pheno_data module
- dae.pheno.pheno_import module
- dae.pheno.prepare_data module
- dae.pheno.registry module
- dae.pheno.storage module
- dae.pheno.update_pheno_descriptions module
- Module contents
- dae.pheno_tool package
- dae.query_variants package
- dae.schema2_storage package
- dae.studies package
- dae.task_graph package
- dae.testing package
- dae.tools package
- Submodules
- dae.tools.cnv_liftover module
- dae.tools.dae2vcf module
- dae.tools.dae_liftover module
- dae.tools.denovo2vcf module
- dae.tools.denovo_liftover module
- dae.tools.draw_pedigree module
- dae.tools.generate_common_report module
- dae.tools.generate_denovo_gene_sets module
- dae.tools.gpf_convert_study_config module
- dae.tools.gpf_validation_runner module
- dae.tools.grr_cache_repo module
- dae.tools.ped2ped module
- dae.tools.simple_study_import module
- dae.tools.to_gpf_gene_models_format module
- dae.tools.vcf2tsv module
- dae.tools.vcf_liftover module
- Module contents
- dae.utils package
- Submodules
- dae.utils.cnv_utils module
- dae.utils.dae_utils module
- dae.utils.debug_closing module
- dae.utils.dict_utils module
- dae.utils.filehash module
- dae.utils.fixtures module
- dae.utils.fs_utils module
- dae.utils.helpers module
- dae.utils.progress module
- dae.utils.regions module
- dae.utils.sql_utils module
- dae.utils.stats_collection module
- dae.utils.variant_utils module
- dae.utils.verbosity_configuration module
- Module contents
- dae.variants package
- dae.variants_loaders package
- dae.annotation package
- Module contents
- Subpackages