dae Interface
- Genomic Resources
- Classes and Functions
- dae.genomic_resources package
- Subpackages
- Submodules
- dae.genomic_resources.aggregators module
- dae.genomic_resources.cached_repository module
- dae.genomic_resources.cli module
- dae.genomic_resources.cnv_collection module
- dae.genomic_resources.draw_score_histograms module
- dae.genomic_resources.fsspec_protocol module
- dae.genomic_resources.genomic_context module
- dae.genomic_resources.genomic_scores module
- dae.genomic_resources.group_repository module
- dae.genomic_resources.histogram module
- dae.genomic_resources.liftover_chain module
- dae.genomic_resources.reference_genome module
- dae.genomic_resources.repository module
- dae.genomic_resources.repository_factory module
- dae.genomic_resources.resource_implementation module
- dae.genomic_resources.testing module
- dae.genomic_resources.variant_utils module
- Module contents
- dae.genomic_resources package
- Classes and Functions
- Annotation
- Classes and Functions
- dae.annotation package
- Subpackages
- Submodules
- dae.annotation.annotatable module
- dae.annotation.annotate_columns module
- dae.annotation.annotate_doc module
- dae.annotation.annotate_schema2_parquet module
- dae.annotation.annotate_utils module
- dae.annotation.annotate_vcf module
- dae.annotation.annotation_config module
- dae.annotation.annotation_factory module
- dae.annotation.annotation_pipeline module
- dae.annotation.annotator_base module
- dae.annotation.cnv_collection_annotator module
- dae.annotation.context module
- dae.annotation.debug_annotator module
- dae.annotation.effect_annotator module
- dae.annotation.gene_score_annotator module
- dae.annotation.gene_set_annotator module
- dae.annotation.liftover_annotator module
- dae.annotation.normalize_allele_annotator module
- dae.annotation.parquet module
- dae.annotation.reannotate_instance module
- dae.annotation.record_to_annotatable module
- dae.annotation.score_annotator module
- dae.annotation.simple_effect_annotator module
- Module contents
- dae.annotation package
- Classes and Functions
- Effect Annotation
- Classes and Functions
- dae.effect_annotation package
- Subpackages
- Submodules
- dae.effect_annotation.annotation_effects module
- dae.effect_annotation.annotation_request module
- dae.effect_annotation.annotator module
- dae.effect_annotation.cli module
- dae.effect_annotation.effect module
- dae.effect_annotation.gene_codes module
- dae.effect_annotation.variant module
- Module contents
- dae.effect_annotation package
- Classes and Functions
- Genomic Variants
- Pedigrees Tools
- Classes and Functions
- dae.pedigrees package
- Subpackages
- Submodules
- dae.pedigrees.drawing module
- dae.pedigrees.families_data module
- dae.pedigrees.family module
- dae.pedigrees.family_role_builder module
- dae.pedigrees.family_tag_builder module
- dae.pedigrees.generate_families_cache module
- dae.pedigrees.layout module
- dae.pedigrees.loader module
- dae.pedigrees.pedigrees module
- dae.pedigrees.testing module
- Module contents
- dae.pedigrees package
- Classes and Functions
- Variants Loaders
- Import Tools
- Genotype Data Parquet Writers
- Query Genomic Variants
- dae.query_variants package
- Subpackages
- Submodules
- dae.query_variants.attributes_query module
AndNode
BaseQueryTransformerMatcher
BaseTreeTransformer
BitwiseTreeTransformer
ContainsNode
ElementOfNode
EqualsNode
GreaterThanEqNode
GreaterThanNode
LeafNode
LessThanEqNode
LessThanNode
Matcher
NotNode
OrNode
QueryTransformerMatcher
QueryTreeToBitwiseLambdaTransformer
QueryTreeToLambdaTransformer
QueryTreeToSQLBitwiseTransformer
QueryTreeToSQLTransformer
StringQueryToTreeTransformer
TreeNode
get_bit_and_str()
inheritance_converter()
roles_converter()
sex_converter()
variant_type_converter()
- dae.query_variants.attributes_query_inheritance module
- dae.query_variants.base_query_variants module
- dae.query_variants.query_runners module
- Module contents
- dae.query_variants.sql package
- dae.query_variants.sql.schema2 package
- Subpackages
- Submodules
- dae.query_variants.sql.schema2.base_query_builder module
- dae.query_variants.sql.schema2.base_variants module
- dae.query_variants.sql.schema2.family_builder module
- dae.query_variants.sql.schema2.sql_query_builder module
- dae.query_variants.sql.schema2.summary_builder module
- Module contents
- dae.query_variants package
- Genotype Storage
- In-Memory Genotype Storage
- Impala Genotype Storages
- Configuration
- Genotype Data
- Phenotype Data
- Phenotype tool
- Enrichment Tool
- Gene Properties
- Tools
- Classes and Functions
- dae.annotation package
- Subpackages
- Submodules
- dae.annotation.annotatable module
- dae.annotation.annotate_columns module
- dae.annotation.annotate_doc module
- dae.annotation.annotate_schema2_parquet module
- dae.annotation.annotate_utils module
- dae.annotation.annotate_vcf module
- dae.annotation.annotation_config module
- dae.annotation.annotation_factory module
- dae.annotation.annotation_pipeline module
- dae.annotation.annotator_base module
- dae.annotation.cnv_collection_annotator module
- dae.annotation.context module
- dae.annotation.debug_annotator module
- dae.annotation.effect_annotator module
- dae.annotation.gene_score_annotator module
- dae.annotation.gene_set_annotator module
- dae.annotation.liftover_annotator module
- dae.annotation.normalize_allele_annotator module
- dae.annotation.parquet module
- dae.annotation.reannotate_instance module
- dae.annotation.record_to_annotatable module
- dae.annotation.score_annotator module
- dae.annotation.simple_effect_annotator module
- Module contents
- dae.annotation package
- Classes and Functions