dae.query_variants.sql package

Subpackages

• dae.query_variants.sql.schema2 package
  • Subpackages
    • dae.query_variants.sql.schema2.tests package
      • Submodules
      • dae.query_variants.sql.schema2.tests.conftest module
      • dae.query_variants.sql.schema2.tests.test_query_builders module
      • dae.query_variants.sql.schema2.tests.test_sql_query_builder module
      • dae.query_variants.sql.schema2.tests.test_sql_query_builder_duckdb module
      • dae.query_variants.sql.schema2.tests.test_sql_query_builder_duckdb_with_partitions module
      • Module contents
  • Submodules
  • dae.query_variants.sql.schema2.base_query_builder module
    • BaseQueryBuilder
      • BaseQueryBuilder.GENE_REGIONS_HEURISTIC_CUTOFF
      • BaseQueryBuilder.GENE_REGIONS_HEURISTIC_EXTEND
      • BaseQueryBuilder.MAX_CHILD_NUMBER
      • BaseQueryBuilder.QUOTE
      • BaseQueryBuilder.WHERE
      • BaseQueryBuilder.build_query()
    • Dialect
      • Dialect.add_unnest_in_join()
      • Dialect.array_item_suffix()
      • Dialect.build_array_join()
      • Dialect.build_table_name()
      • Dialect.escape_char()
      • Dialect.escape_quote_char()
      • Dialect.float_type()
      • Dialect.int_type()
      • Dialect.string_type()
      • Dialect.use_bit_and_function()
  • dae.query_variants.sql.schema2.base_variants module
    • SqlSchema2Variants
      • SqlSchema2Variants.RUNNER_CLASS
      • SqlSchema2Variants.build_family_variants_query_runner()
      • SqlSchema2Variants.build_summary_variants_query_runner()
      • SqlSchema2Variants.query_summary_variants()
      • SqlSchema2Variants.query_variants()
  • dae.query_variants.sql.schema2.family_builder module
    • FamilyQueryBuilder
  • dae.query_variants.sql.schema2.sql_query_builder module
    • Db2Layout
      • Db2Layout.db
      • Db2Layout.family
      • Db2Layout.meta
      • Db2Layout.pedigree
      • Db2Layout.study
      • Db2Layout.summary
    • QueryBuilderBase
      • QueryBuilderBase.GENE_REGIONS_HEURISTIC_CUTOFF
      • QueryBuilderBase.GENE_REGIONS_HEURISTIC_EXTEND
      • QueryBuilderBase.REGION_BINS_HEURISTIC_CUTOFF
      • QueryBuilderBase.all_region_bins()
      • QueryBuilderBase.build_gene_regions()
      • QueryBuilderBase.build_inheritance_query()
      • QueryBuilderBase.build_roles_query()
      • QueryBuilderBase.build_schema()
      • QueryBuilderBase.build_sexes_query()
      • QueryBuilderBase.build_statuses_query()
      • QueryBuilderBase.build_variant_types_query()
      • QueryBuilderBase.calc_batched_heuristics()
      • QueryBuilderBase.calc_coding_bins()
      • QueryBuilderBase.calc_family_bins()
      • QueryBuilderBase.calc_frequency_bins()
      • QueryBuilderBase.calc_heuristics()
      • QueryBuilderBase.calc_region_bins()
      • QueryBuilderBase.check_inheritance_denovo_only()
      • QueryBuilderBase.check_inheritance_query_value()
      • QueryBuilderBase.check_roles_denovo_only()
      • QueryBuilderBase.check_roles_query_value()
      • QueryBuilderBase.check_sexes_query_value()
      • QueryBuilderBase.check_statuses_query_value()
      • QueryBuilderBase.check_variant_types_value()
    • QueryHeuristics
      • QueryHeuristics.coding_bins
      • QueryHeuristics.family_bins
      • QueryHeuristics.frequency_bins
      • QueryHeuristics.is_empty()
      • QueryHeuristics.region_bins
    • SqlQueryBuilder
      • SqlQueryBuilder.apply_family_heuristics()
      • SqlQueryBuilder.apply_summary_heuristics()
      • SqlQueryBuilder.build()
      • SqlQueryBuilder.build_family_variants_query()
      • SqlQueryBuilder.build_summary_variants_query()
      • SqlQueryBuilder.calc_zygosity_status_value()
      • SqlQueryBuilder.categorical_attr()
      • SqlQueryBuilder.coding_bins()
      • SqlQueryBuilder.effect_types()
      • SqlQueryBuilder.family_base()
      • SqlQueryBuilder.family_bins()
      • SqlQueryBuilder.family_ids()
      • SqlQueryBuilder.family_query()
      • SqlQueryBuilder.family_variants()
      • SqlQueryBuilder.frequency()
      • SqlQueryBuilder.frequency_bins()
      • SqlQueryBuilder.genes()
      • SqlQueryBuilder.inheritance()
      • SqlQueryBuilder.person_ids()
      • SqlQueryBuilder.real_attr()
      • SqlQueryBuilder.region_bins()
      • SqlQueryBuilder.regions()
      • SqlQueryBuilder.replace_tables()
      • SqlQueryBuilder.resolve_tags()
      • SqlQueryBuilder.roles()
      • SqlQueryBuilder.sexes()
      • SqlQueryBuilder.statuses()
      • SqlQueryBuilder.summary_base()
      • SqlQueryBuilder.summary_query()
      • SqlQueryBuilder.summary_variants()
      • SqlQueryBuilder.ultra_rare()
    • TagsQuery
      • TagsQuery.deselected_family_tags
      • TagsQuery.model_computed_fields
      • TagsQuery.model_config
      • TagsQuery.model_fields
      • TagsQuery.selected_family_tags
      • TagsQuery.tags_or_mode
    • ZygosityQuery
      • ZygosityQuery.children_zygosity
      • ZygosityQuery.model_computed_fields
      • ZygosityQuery.model_config
      • ZygosityQuery.model_fields
      • ZygosityQuery.parents_zygosity
      • ZygosityQuery.sex_zygosity
      • ZygosityQuery.status_zygosity
  • dae.query_variants.sql.schema2.summary_builder module
    • SummaryQueryBuilder
  • Module contents

Module contents