draw_score_histograms

draw_score_histograms draws the histograms of the scores of the resources of a GRR. It finds the GRR that starts at the current directory, or at the -R repository. It writes the histogram files into the directory of each score resource. The GRR must be a read-write GRR, for example a local directory. Use it after you add or change a score resource, so that the GRR info page of the resource shows the histograms.

Examples

draw_score_histograms

Draws the histograms of the score resource that contains the current directory. If the current directory is not inside a resource, it draws the histograms of every resource below the current directory. Run the command from the GRR root to cover the whole repository.

draw_score_histograms -R /data/grr -r hg38/scores/phyloP100way

Draws the histograms of one score resource of the GRR in /data/grr. The -r option takes a resource id or a glob pattern on resource ids, for example hg38/scores/phyloP*. The -R option sets the repository root for the resource ids.

Option reference

usage: draw_score_histograms [-h] [--verbose] [--logfile LOGFILE]
                             [-R REPOSITORY] [-r RESOURCE]

Named Arguments

--verbose, -v, -V

Default: 0

--logfile

File to log output to. If not set, logs to console.

-R, --repository

Optional URL to the genomic resources repository.

-r, --resource

Optional URL to the resource.