dae.gpf_instance_plugin package

Submodules

class dae.gpf_instance_plugin.gpf_instance_context_plugin.GPFInstanceContextProvider[source]

Defines GPFInstance genomic context provider.

static add_argparser_arguments(parser: ArgumentParser) → None[source]: Add command line arguments to the argument parser.

static init(**kwargs: Any) → GenomicContext | None[source]: Initialize the GPF instance genomic context.

class dae.gpf_instance_plugin.gpf_instance_context_plugin.GPFInstanceGenomicContext(gpf_instance: Any)[source]

Defines GPFInstance genomic context.

get_context_keys() → set[str][source]: Return set of all keys that could be found in the context.

get_context_object(key: str) → Any | None[source]

Return a genomic context object corresponding to the passed key.

If there is no such object returns None.

get_source() → tuple[str, ...][source]: Return a tuple of strings that identifies the genomic context.