dae.gpf_instance_plugin package

Submodules

dae.gpf_instance_plugin.gpf_instance_context_plugin module

class dae.gpf_instance_plugin.gpf_instance_context_plugin.GPFInstanceContextProvider[source]

Bases: GenomicContextProvider

Defines GPFInstance genomic context provider.

static add_argparser_arguments(parser: ArgumentParser) None[source]

Add command line arguments to the argument parser.

static init(**kwargs: Any) GenomicContext | None[source]

Initialize the GPF instance genomic context.

class dae.gpf_instance_plugin.gpf_instance_context_plugin.GPFInstanceGenomicContext(gpf_instance: Any)[source]

Bases: GenomicContext

Defines GPFInstance genomic context.

get_context_keys() set[str][source]

Return set of all keys that could be found in the context.

get_context_object(key: str) Any | None[source]

Return a genomic context object corresponding to the passed key.

If there is no such object returns None.

get_source() tuple[str, ...][source]

Return a tuple of strings that identifies the genomic context.

Module contents