genomes_api package

Subpackages

genomes_api.tests package

Submodules

genomes_api.urls module

genomes_api.views module

class genomes_api.views.DefaultGeneModelsId[source]

Bases: QueryBaseView

get(_request: Request) → Response[source]

class genomes_api.views.GeneModels[source]

Bases: QueryBaseView

Process gene model response.

cds_to_dictlist(cds: tuple[int, int]) → list[dict[str, Any]][source]

exon_to_dict(exon: Exon) → dict[str, Any][source]

get(_request: Request, gene_symbol: str) → Response[source]: Return gene mode corresponding to a gene symbol.

region_to_dict(region: Region) → dict[str, Any][source]

transcript_to_dict(transcript: TranscriptModel) → dict[str, Any][source]: Serialize a transcript model.

class genomes_api.views.GeneSymbolsSearch[source]

Bases: QueryBaseView

Process search for a gene symbol.

RESPONSE_LIMIT = 20

get(_request: Request, search_term: str) → Response[source]: Return list of gene symbols matching the search.

class genomes_api.views.GeneSymbolsValidate[source]

Bases: QueryBaseView

Process validation for gene symbols.

post(request: Request) → Response[source]: Return list gene symbols that are not valid.

Module contents