gene_sets package
Subpackages
- gene_sets.tests package
- Submodules
- gene_sets.tests.test_gene_sets_api module
name_in_gene_sets()test_bad_gene_set_collection_not_found()test_denovo_gene_set_download()test_denovo_gene_set_not_found()test_denovo_gene_sets()test_denovo_gene_sets_types()test_gene_set_download_missense()test_gene_sets_collections()test_gene_sets_empty_query()test_gene_sets_missing_collection()test_get_bad_gene_set_collection_not_found()test_get_denovo_gene_set_not_found()test_get_gene_set_collection_empty_query()test_get_gene_set_download_synonymous_autism()test_get_gene_set_download_synonymous_recurrent()test_get_gene_set_download_synonymous_triple()test_get_main_gene_set_not_found()test_main_gene_set_not_found()
- Module contents
Submodules
gene_sets.urls module
gene_sets.views module
Classes to handle gene set views.
- class gene_sets.views.DenovoGeneSetsDb[source]
Bases:
QueryBaseViewClass to return the entire denovo gene sets db.
Used for federation remote purposes.
- class gene_sets.views.DenovoGeneSetsTypesView[source]
Bases:
QueryBaseViewClass to handle denovo gene sets view.
- class gene_sets.views.GeneSetDownloadView[source]
Bases:
QueryBaseViewClass to handle gene set download view.
- {
“geneSetsCollection”: “denovo”, “geneSet”: “LGDs”, “geneSetsTypes”: [
- {
“datasetId”: “SD_TEST”, “collections”: [
- {
“personSetId”: “phenotype” “types”: [
“autism”, “epilepsy”,
]
}
]
}
]
}
- class gene_sets.views.GeneSetsCollectionsView[source]
Bases:
QueryBaseViewClass to handle gene sets collections view.
- class gene_sets.views.GeneSetsHasDenovoView[source]
Bases:
QueryBaseView
- class gene_sets.views.GeneSetsView[source]
Bases:
QueryBaseViewClass to handle gene set view.
{ “geneSetsCollection”: “main”, “geneSetsTypes”: {
“SD_TEST”: [“autism”, “epilepsy”],
}, “filter”: “ivan”, “limit”: 100 }