pheno_browser_api package

Subpackages

• pheno_browser_api.tests package
  • Submodules
  • pheno_browser_api.tests.test_pheno_browser_api module
    • test_anonymous_instruments_allowed()
    • test_anonymous_measures_allowed()
    • test_download()
    • test_download_all_instruments()
    • test_download_all_instruments_specific_measures()
    • test_download_specific_measures()
    • test_get_measure_values()
    • test_get_specific_measure_values()
    • test_instruments()
    • test_instruments_missing_dataset_id()
    • test_instruments_missing_dataset_id_forbidden()
    • test_measure_details()
    • test_measure_values_limits_measures()
    • test_measures()
    • test_measures_count()
    • test_measures_info()
    • test_pheno_browser_api_permissions()
  • Module contents

Submodules

pheno_browser_api.urls module

pheno_browser_api.views module

exception pheno_browser_api.views.CountError

Bases: Exception

class pheno_browser_api.views.PhenoConfigView

Bases: QueryBaseView, DatasetAccessRightsView

Phenotype data configuration view.

get(request: Request) → Response

Get the phenotype data configuration.

class pheno_browser_api.views.PhenoImagesView

Bases: QueryBaseView, DatasetAccessRightsView

Remote pheno images view.

get(_request: Request, pheno_id: str, image_path: str) → Response | HttpResponse

Return raw image data from a remote GPF instance.

class pheno_browser_api.views.PhenoInstrumentsView

Bases: QueryBaseView

Phenotype instruments view.

get(request: Request) → Response

Get phenotype instruments.

class pheno_browser_api.views.PhenoMeasureDescriptionView

Bases: QueryBaseView

Phenotype measures description view.

get(request: Request) → Response

Get pheno measures description.

class pheno_browser_api.views.PhenoMeasureValues

Bases: QueryBaseView, DatasetAccessRightsView

Phenotype measure values view.

post(request: Request) → Response

Return measure values as stream.

class pheno_browser_api.views.PhenoMeasuresCount

Bases: QueryBaseView, DatasetAccessRightsView

Phenotype measure search count view.

get(request: Request) → Response

Return a CSV file stream for measures.

get_count(request: Request) → int

Return measure count for request.

class pheno_browser_api.views.PhenoMeasuresDownload

Bases: QueryBaseView, DatasetAccessRightsView

Phenotype measure downloads view.

count_measure_ids(request: Request) → int

Get measure ids.

csv_value_iterator(dataset: WDAEStudy, measure_ids: list[str]) → Generator[str, None, None]

Create CSV content for people measures data.

get(request: Request) → Response

Return a CSV file stream for measures.

get_measure_ids(request: Request) → Generator[str, None, None]

Get measure ids.

head(request: Request) → Response

Return a status code validating if measures can be downloaded.

class pheno_browser_api.views.PhenoMeasuresInfoView

Bases: QueryBaseView

Phenotype measures info view.

get(request: Request) → Response

Get pheno measures info.

class pheno_browser_api.views.PhenoMeasuresView

Bases: QueryBaseView

Phenotype measures view.

get(request: Request) → Response

Get pheno measures pages.

Module contents