gain.gene_scores.implementations package

Submodules

gain.gene_scores.implementations.gene_scores_impl module

class gain.gene_scores.implementations.gene_scores_impl.GeneScoreImplementation(resource: GenomicResource)

Bases: GenomicResourceImplementation, InfoImplementationMixin

Class used to represent gene score resource implementations.

calc_info_hash() → bytes

Compute and return the info hash.

calc_statistics_hash() → bytes

Compute the statistics hash.

This hash is used to decide whether the resource statistics should be recomputed.

collect_index_info() → tuple[tuple[str, ...], tuple[str, ...]]

Collect resource info for FTS index building.

Returns a (header, row) pair where header contains field names and row contains the corresponding values for this resource. Label keys/values are appended after the fixed fields.

create_statistics_build_tasks(**kwargs: Any) → list[TaskDesc]

Create tasks for calculating resource statistics for task graph.

get_info(**kwargs: Any) → str

Construct the contents of the implementation’s HTML info page.

get_statistics_info(**kwargs: Any) → str

Construct the contents of the implementation’s HTML statistics info page.

styles_template_name: ClassVar[str] = 'gene_score_styles.jinja'

template_name: ClassVar[str] = 'gene_score.jinja'

Module contents