gain.gene_sets.implementations package

Submodules

gain.gene_sets.implementations.gene_sets_impl module

class gain.gene_sets.implementations.gene_sets_impl.GeneSetCollectionImpl(resource: GenomicResource)

Bases: GenomicResourceImplementation, InfoImplementationMixin, ResourceConfigValidationMixin

Gene sets collection resource implementations.

calc_info_hash() → bytes

Compute and return the info hash.

calc_statistics_hash() → bytes

Compute the statistics hash.

This hash is used to decide whether the resource statistics should be recomputed.

create_statistics_build_tasks(**kwargs: Any) → list[TaskDesc]

Create tasks for calculating resource statistics for task graph.

get_info(**kwargs: Any) → str

Construct the contents of the implementation’s HTML info page.

static get_schema() → dict[str, Any]

Return schema to be used for config validation.

get_statistics_info(**kwargs: Any) → str

Construct the contents of the implementation’s HTML statistics info page.

styles_template_name: ClassVar[str] = 'gene_set_collection_styles.jinja'

template_name: ClassVar[str] = 'gene_set_collection.jinja'

Module contents